Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1988
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39435| Best HMM Match : 7tm_1 (HMM E-Value=4.60004e-41)             30   2.1  
SB_54835| Best HMM Match : Laminin_EGF (HMM E-Value=0.13)              29   3.6  
SB_59676| Best HMM Match : VWA (HMM E-Value=8.8e-12)                   29   3.6  
SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08)                  28   8.4  

>SB_39435| Best HMM Match : 7tm_1 (HMM E-Value=4.60004e-41)
          Length = 352

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 330 VSSCTH*IIYLFTRLL*KGYFFRAYVCK*CNSLVPYNVNLLTDFNI 467
           V+SC + ++Y F     K  F R + C+ C S + +N+  L  F +
Sbjct: 284 VNSCLNPVLYAFQSSSYKRGFVRFFTCRCCISSMEHNIPGLNTFQV 329


>SB_54835| Best HMM Match : Laminin_EGF (HMM E-Value=0.13)
          Length = 625

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 499 RNTQGVKMTTHMLKSVKRFTLYGTNELHYLHTYARK 392
           R+ Q V+  THM ++++  T Y T +    HT +R+
Sbjct: 488 RHAQRVQHKTHMTRNMQNTTAYNTKQARPQHTKSRR 523


>SB_59676| Best HMM Match : VWA (HMM E-Value=8.8e-12)
          Length = 678

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 92  FFSNEMYNI-QNITRILQIVFSSHLVFCERQFLSRFVCSHRKGARY 226
           F +   Y++ +N+ RI +I  +SH+  CE   +  + CSHR  A+Y
Sbjct: 167 FVAKSFYHLSRNLKRIKKI--ASHI--CEAGDVGGYTCSHRDAAKY 208


>SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08)
          Length = 970

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 479 FYALSITGR*AHGLNLREFANTNPSKSKCCAESTTGSESRPTEKIRR 619
           F  ++I    AH LNL+ F + NP+  K     T  +E     K  R
Sbjct: 813 FLGVNIAAEHAHSLNLKPFKDINPNLRKAILVGTYRTEPEALVKEMR 859


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,208,794
Number of Sequences: 59808
Number of extensions: 358438
Number of successful extensions: 974
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)