Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1988
         (699 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC033726-1|AAH33726.1|  544|Homo sapiens coiled-coil domain cont...    35   0.24 
D26350-1|BAA05384.1| 2701|Homo sapiens type 2 inositol 1,4,5-tri...    34   0.56 
AK027171-1|BAB15683.1|  305|Homo sapiens protein ( Homo sapiens ...    33   0.74 
AF245436-1|AAG44484.1|  544|Homo sapiens HT025 protein.                33   0.74 

>BC033726-1|AAH33726.1|  544|Homo sapiens coiled-coil domain
           containing 82 protein.
          Length = 544

 Score = 35.1 bits (77), Expect = 0.24
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = -3

Query: 526 QVEPVSSSTRNTQGVKMTTHMLKSVKRFTLYGTNELHYLH 407
           Q E      +N QG K+TT  LK VKR +LY  ++ HY H
Sbjct: 301 QDEEGDEENKNQQGEKLTTSQLKLVKRNSLYSFSD-HYTH 339


>D26350-1|BAA05384.1| 2701|Homo sapiens type 2 inositol
            1,4,5-trisphosphate receptor protein.
          Length = 2701

 Score = 33.9 bits (74), Expect = 0.56
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 38   LHHRLGPRF*KILEGPAWFFSNEMYNIQNITRILQIVFS 154
            L  R GPRF + L GPAW + N +  +Q++   L+  FS
Sbjct: 1580 LSARSGPRFKEALGGPAWDYRNIIEKLQDVVASLEHQFS 1618


>AK027171-1|BAB15683.1|  305|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ23518 fis, clone LNG04878. ).
          Length = 305

 Score = 33.5 bits (73), Expect = 0.74
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -3

Query: 526 QVEPVSSSTRNTQGVKMTTHMLKSVKRFTLYGTNELHYLH 407
           Q E      +N QG K+TT  LK VK+ +LY  ++ HY H
Sbjct: 79  QDEEGDEENKNQQGEKLTTSQLKLVKQNSLYSFSD-HYTH 117


>AF245436-1|AAG44484.1|  544|Homo sapiens HT025 protein.
          Length = 544

 Score = 33.5 bits (73), Expect = 0.74
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -3

Query: 526 QVEPVSSSTRNTQGVKMTTHMLKSVKRFTLYGTNELHYLH 407
           Q E      +N QG K+TT  LK VK+ +LY  ++ HY H
Sbjct: 301 QDEEGDEENKNQQGEKLTTSQLKLVKQNSLYSFSD-HYTH 339


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,068,166
Number of Sequences: 237096
Number of extensions: 1642653
Number of successful extensions: 3118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3118
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)