Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1988
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   2.1  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   2.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   8.5  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 266 RYNYLVYLLFILVFIPYVSEIRQFVYSLNNI 358
           R+NY+V L+  L+   Y  E+    Y   NI
Sbjct: 2   RHNYIVILILSLLTWTYAEELYSDKYDYVNI 32


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 266 RYNYLVYLLFILVFIPYVSEIRQFVYSLNNI 358
           R+NY+V L+  L+   Y  E+    Y   NI
Sbjct: 2   RHNYIVILILSLLTWTYAEELYSDKYDYVNI 32


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 557 SKCCAESTTGSESRPTEKIRRETQ 628
           S   A  TTG+ + PT ++R+  Q
Sbjct: 248 SNATAAMTTGTTTIPTRRLRKRRQ 271


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +2

Query: 278 LVYLLFILVFIP 313
           LVY++ +++FIP
Sbjct: 407 LVYIIMLIIFIP 418


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 481 KMTTHMLKSVKRFTLYGTNELHYLHTYARKK 389
           K T +ML  V+ +  YG   ++ +  YA+ K
Sbjct: 312 KTTLNMLTQVECYKYYGNIMVNAMCAYAKGK 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,768
Number of Sequences: 438
Number of extensions: 3753
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)