Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1988
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33390.1 68415.m04093 expressed protein                             31   0.97 
At5g47070.1 68418.m05800 protein kinase, putative similar to pro...    27   9.0  
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR...    27   9.0  
At2g46850.1 68415.m05846 expressed protein                             27   9.0  

>At2g33390.1 68415.m04093 expressed protein 
          Length = 98

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 551 SKSKCCAESTTGSESRPTEKIRRETQWVGICG 646
           S+S+C      G  SR T+KI+R  QW  I G
Sbjct: 37  SESQCLLPPRKGGMSRSTDKIKRTVQWNDIKG 68


>At5g47070.1 68418.m05800 protein kinase, putative similar to
           protein kinase [Lophopyrum elongatum]
           gi|13022177|gb|AAK11674
          Length = 410

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 491 SGRKNDDSYVEIRQKVHVVWYQRITLLTYIRSKKITL 381
           S R   D Y E  Q + V  Y+ ++  TY+ S+K+ +
Sbjct: 56  SPRSIKDLYTEREQNLRVFSYEELSKATYVFSRKLVI 92


>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1210

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
 Frame = +2

Query: 437 QREPFDGFQHMSRHFYALS--------ITGR*AHGLNLREFANTNP 550
           Q+ P+DGF+ ++R F AL+        + G    G++L E+ N  P
Sbjct: 423 QKFPYDGFKKLAREFTALAGELPLGLRVLGSYLRGMSLEEWKNALP 468


>At2g46850.1 68415.m05846 expressed protein 
          Length = 633

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 206 GNIRNETRTVFHKTLSDLKIQFV 138
           GN+ N TR + HK L + +I+F+
Sbjct: 372 GNLTNGTRVIVHKVLCENQIEFM 394


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,274,386
Number of Sequences: 28952
Number of extensions: 242758
Number of successful extensions: 563
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)