Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1987
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|... 150 2e-37
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 42 1e-04
SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa... 31 0.23
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 29 0.70
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 28 1.6
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 26 4.9
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 6.5
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 26 6.5
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 25 8.6
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 8.6
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p... 25 8.6
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.6
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 25 8.6
>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
1|||Manual
Length = 863
Score = 150 bits (363), Expect = 2e-37
Identities = 85/208 (40%), Positives = 123/208 (59%), Gaps = 1/208 (0%)
Frame = +1
Query: 85 QILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVPFFFQGGNSQVARMAAGLQLK 264
+ L +T+SPD N A + L++AA T+F ++ +L+ + RMAAGL LK
Sbjct: 5 EFLAQTLSPDANVRLNAEKQLENAARTDFAQYMVLLAQE--LANDNSMPYIRMAAGLALK 62
Query: 265 NHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGT-ENSRPSSAAQCVAYVAVAEL 441
N +T+++ K +YQQ W +L +++ +K L +G+ E+ SAAQ VA +A EL
Sbjct: 63 NAITAREEARKLEYQQLWQSLPVEIKQQVKSLALQTLGSSEHQAGQSAAQLVAAIAAYEL 122
Query: 442 PVGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTGIIHGM 621
QW DL+ LV NV Q + LK+ + L+ IGYIC+ + EVL+ +SN ILT ++ G
Sbjct: 123 ATNQWPDLMVTLVANVGEGQPSALKQHS-LQTIGYICESVSPEVLSAQSNAILTAVVAGA 181
Query: 622 RSTEPSNHVRLAATQALLNSLEFTRANF 705
R EP VRLAA AL +SLEF R NF
Sbjct: 182 RKEEPDAAVRLAALGALYDSLEFVRENF 209
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 41.5 bits (93), Expect = 1e-04
Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 4/210 (1%)
Frame = +1
Query: 55 MHAETTLTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVPFFFQGGNSQV 234
M A+ TL L Q+L ++++PD ++ A R L+ T +LS N QV
Sbjct: 1 MDAQFTLELTQLLFQSIAPDTTQITEATRALE---TKYLKEPGSLLSLFHIMGTCENPQV 57
Query: 235 ARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAI--GTENSRPSSAA 408
++AA ++ + L +Y W ++ DV+ I+ N+L E+ +
Sbjct: 58 RQLAA-IEARK--------LCHKY---WSSVDADVQNQIRSNLLDITLKEPESIVRHAFG 105
Query: 409 QCVAYVAVAELPVGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERS 588
+ +A +A +LP G+WN+L L VQ+T + ++ E Y+ I AE + +
Sbjct: 106 RVIAALAKLDLPEGKWNELSAFL------VQATMDQNDSIREMAVYVLYSI-AETV-DLD 157
Query: 589 NQILTGIIH--GMRSTEPSNHVRLAATQAL 672
N++L ++ T+ S VR+ + Q L
Sbjct: 158 NKLLLDFVNLFSQTITDSSRTVRVTSVQGL 187
>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 30.7 bits (66), Expect = 0.23
Identities = 13/72 (18%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 253 LQLKNHLTSKDP--TLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQCVAYV 426
LQ+K ++ P TL+ ++ W + D ++++ + P +C+ Y+
Sbjct: 25 LQIKEQYDAEQPLITLQTKFNLAWALVRSDSTQHVQQGLSLFCSIYKDSPERRLECLYYI 84
Query: 427 AVAELPVGQWND 462
A++ + Q+ +
Sbjct: 85 ALSHYKLKQYEE 96
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 29.1 bits (62), Expect = 0.70
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = +1
Query: 472 ILVENVVHVQSTELKKEAT--LEAIGYI-CQDIDAEVLTERSNQILTGIIHGMRSTEPSN 642
+ ++ VV +S L A +E I I QD+D E L + N GI+ G E +
Sbjct: 164 VRIDGVVKPRSRFLGNSAASIMEGIASIKLQDLDEEYLITQPNVYARGILFGKMRLELGD 223
Query: 643 HVRLAATQALLNS-LEFTRANF 705
HV + + L + +EF F
Sbjct: 224 HVTVRCPKTDLQADIEFKVKGF 245
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/48 (27%), Positives = 31/48 (64%)
Frame = +2
Query: 2 KNRIESVFCNINLRIVKQCTQKQH*RLYKYLRRQFHLIEMNWKQQLDT 145
++++E+ N N +++K+ +++Q R YK + ++ IE+N Q+D+
Sbjct: 742 RSKLEAYHINCN-KVIKEFSKRQTAR-YKIIEKELAQIEVNLVSQIDS 787
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -1
Query: 624 PHAMYDARKNLITSFC*YFSINILTNVANSLQSRFLFEFSRLDMNNI 484
PH + +N + FC + + ++N S + L S D+NN+
Sbjct: 256 PHFYLNDSRNSLNYFCPFSAFEDISNSVRSSCGKRLSPSSNFDLNNL 302
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 37 LKNSETMHAETTLTLIQILEKTVSPDRNELEAAVRYLDH 153
+KN + H +T L + IL++ D + +RYL H
Sbjct: 549 IKNRQKFHGQT-LVEVGILKRLCEADPADKNNVIRYLSH 586
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -2
Query: 140 LTAASNSFRSGETVFSSICISVNVVSACI 54
LTA + S +G ++ S+I ++ N++SA I
Sbjct: 117 LTAYATSAFAGHSLLSTIAVANNIISAAI 145
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +1
Query: 199 VPFFFQGGNSQVARMAAGLQLKNHLTSKDPTLK---QQYQQRWLALAEDVRLYIKENILA 369
V +FF G+ + LKN +T K+ K +Q + +L + +L KE +LA
Sbjct: 393 VNYFFHAGHLHIEGQKMSKSLKNFITIKEILKKFTPRQLRLAFLLQQWNTQLDFKETLLA 452
Query: 370 AI 375
+
Sbjct: 453 YV 454
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.4 bits (53), Expect = 8.6
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +1
Query: 205 FFFQGGNSQVARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTE 384
F GG+ +A++ + K HL S D TL+ +A+ + +R I + I
Sbjct: 212 FLLMGGHIVLAKILQAIHEKKHLKSPDITLE-------IAILKSMRCIIGQKIGTDFYLS 264
Query: 385 NSRP-SSAAQCV 417
N P S C+
Sbjct: 265 NKYPIDSVVHCL 276
>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 472
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 570 FSINILTNVANSLQSRFLFEFSRLDMNNIFYKNW 469
F I +L V L+ + L + SRL ++ + ++NW
Sbjct: 421 FFIQLLMAVFKLLKPKLLVDDSRLVLSALLFENW 454
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 512 SSVDWT*TTFSTRIGIRSFHCPTGSSATATYAT 414
SS T +T ST SFH PT SS T++ +T
Sbjct: 798 SSSSRTISTSSTNEYNTSFHAPTVSSTTSSSST 830
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 25.4 bits (53), Expect = 8.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 488 LFMSNLLNSKRKRLWR 535
+F+ N+L KR++LWR
Sbjct: 239 VFVENVLTKKRRKLWR 254
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,051
Number of Sequences: 5004
Number of extensions: 55558
Number of successful extensions: 173
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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