Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1987
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0820 + 23437811-23440230,23440336-23440534 122 2e-28
05_03_0648 + 16563147-16565557,16565655-16565850 120 1e-27
03_02_0662 - 10250235-10250433,10250692-10253105 118 4e-27
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 40 0.003
03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852... 37 0.019
08_02_0493 - 17770723-17770758,17770772-17770996,17771051-177720... 33 0.18
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 32 0.42
04_04_1122 + 31052497-31052629,31053133-31053191,31053285-310535... 29 2.9
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 28 6.8
06_02_0024 - 10714741-10716241,10716774-10717840 28 6.8
04_03_0869 + 20421368-20421548,20421781-20422664,20422747-204229... 28 9.0
>12_02_0820 + 23437811-23440230,23440336-23440534
Length = 872
Score = 122 bits (295), Expect = 2e-28
Identities = 77/221 (34%), Positives = 121/221 (54%), Gaps = 2/221 (0%)
Frame = +1
Query: 70 TLTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVPFFFQGGNSQVARMAA 249
+L + Q+L SPD + A L N F+ LS+ + +R A
Sbjct: 2 SLDITQVLLSAQSPDGATRKLAEESLKQFQEQNLPGFLFSLSNE--LANEEKPEESRRLA 59
Query: 250 GLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTE-NSRPSSAAQCVAYV 426
GL LKN L +K+ K + QRWLAL V+ IK +L + + S S+++Q +A V
Sbjct: 60 GLILKNALDAKEQHRKNELFQRWLALDVGVKAQIKGFLLQTLSSPVASARSTSSQVIAKV 119
Query: 427 AVAELPVGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTE-RSNQILT 603
A E+P QW +LI L+ N+ VQ K+ATLE +GY+C+++ E + + + N+ILT
Sbjct: 120 AGIEIPQKQWPELIASLLSNIHQVQPNV--KQATLETLGYLCEEVSPEAVDQDQVNKILT 177
Query: 604 GIIHGMRSTEPSNHVRLAATQALLNSLEFTRANFGKRKRKE 726
++ GM ++E ++ VRLAAT+AL N+L F + NF ++
Sbjct: 178 AVVQGMNASEGNSDVRLAATRALYNALGFAQVNFSNDMERD 218
>05_03_0648 + 16563147-16565557,16565655-16565850
Length = 868
Score = 120 bits (289), Expect = 1e-27
Identities = 73/219 (33%), Positives = 115/219 (52%), Gaps = 2/219 (0%)
Frame = +1
Query: 73 LTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVPFFFQGGNSQVARMAAG 252
+ + QIL S D N A L N F+ LS +R AG
Sbjct: 1 MNITQILLSAQSADGNLRVVAEGNLKQFQEQNLPNFLLSLSVE--LSDNEKPPESRRLAG 58
Query: 253 LQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTE-NSRPSSAAQCVAYVA 429
+ LKN L +KD K+ Q+W++L ++ IKE++L +G+ + +++Q +A VA
Sbjct: 59 IILKNSLDAKDSAKKELLIQQWVSLDPSIKQKIKESLLITLGSSVHDARHTSSQVIAKVA 118
Query: 430 VAELPVGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVL-TERSNQILTG 606
E+P +W +LI L+ N+ + K+ATLEA+GY+C++I E L ++ N +LT
Sbjct: 119 SIEIPRREWQELIAKLLGNMTQQGAPAPLKQATLEALGYVCEEISPEHLEQDQVNAVLTA 178
Query: 607 IIHGMRSTEPSNHVRLAATQALLNSLEFTRANFGKRKRK 723
++ GM TE S VRLAA +AL N+L+F +NF +
Sbjct: 179 VVQGMNQTELSPEVRLAAVKALYNALDFAESNFANEMER 217
>03_02_0662 - 10250235-10250433,10250692-10253105
Length = 870
Score = 118 bits (285), Expect = 4e-27
Identities = 71/214 (33%), Positives = 116/214 (54%), Gaps = 3/214 (1%)
Frame = +1
Query: 73 LTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVPFFFQGGNSQVARMAAG 252
+ + Q+L S D A L NF F++ LS N +R AG
Sbjct: 1 MDITQVLLAAQSHDGQLRTVAEENLKQFQQQNFPHFLQTLSVE--LSNDENPPESRRLAG 58
Query: 253 LQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTE--NSRPSSAAQCVAYV 426
+ LKN L +K+ T K+++ QRW+ + ++ +KE++L +G+ +R SS+ Q +A V
Sbjct: 59 ILLKNSLDAKESTRKEEFVQRWMNVDPAIKSQVKESLLITLGSPVFEARRSSS-QVIAKV 117
Query: 427 AVAELPVGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVL-TERSNQILT 603
A E+P W +LI L+ N+ + K+ATL+ +GY+C++I E L ++ N +LT
Sbjct: 118 AAIEIPHQGWPELIVNLLTNMTKPDAPPCLKQATLDCLGYVCEEISPEDLEQDQVNAVLT 177
Query: 604 GIIHGMRSTEPSNHVRLAATQALLNSLEFTRANF 705
++ GM E ++ VRLAA +AL N+L+F NF
Sbjct: 178 AVVQGMNHVENNSDVRLAAVKALYNALDFAETNF 211
>04_04_1693 +
35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 39.5 bits (88), Expect = 0.003
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Frame = +1
Query: 220 GNSQVARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPS 399
G S AR AAGL LKN+L + ++ QQ Y+K +L IG N
Sbjct: 61 GKSFEARQAAGLLLKNNLRATFSSMPPASQQ-----------YVKSELLPCIGATNKAIR 109
Query: 400 SAAQCVAYVAVAELPVGQWNDLIPILVENVVHVQSTEL-KKEATLEAIGYICQDIDAEV 573
S V V + V W +L L + + S +L E ++AI IC+D+ E+
Sbjct: 110 STVGTVISVLFQIVRVAGWIELFQALHQ---CLDSNDLDHMEGAMDAIYKICEDVPEEL 165
>03_02_0441 -
8517501-8517701,8518004-8518139,8519995-8520107,
8520189-8520284,8520376-8520590,8520675-8520797,
8520887-8520917,8521020-8521079,8521951-8522106,
8522185-8522274,8522347-8522562,8522671-8522805,
8522898-8523401,8523485-8523700,8524411-8524456,
8524542-8524678,8525059-8525191,8526084-8526358
Length = 960
Score = 36.7 bits (81), Expect = 0.019
Identities = 29/135 (21%), Positives = 64/135 (47%), Gaps = 2/135 (1%)
Frame = +1
Query: 292 LKQQYQQRWLALAEDVRLYIKENILAAIGTENSR--PSSAAQCVAYVAVAELPVGQWNDL 465
L+++ W L + +K+ ++ +I ++S ++A V+ +A +P G+W +L
Sbjct: 60 LRKKITSHWPKLPPHAKASLKQALIDSITIDHSHLVRRASANVVSIIAKYAVPAGEWPEL 119
Query: 466 IPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTGIIHGMRSTEPSNH 645
+P + + Q E +E L + + I + ++ L I+ E S+
Sbjct: 120 LPFIFQCSQSPQ--EDHREVALILFSSLTETIGTTFQSHLND--LQPILLKCLQDEASSR 175
Query: 646 VRLAATQALLNSLEF 690
VR+AA +A+ + +E+
Sbjct: 176 VRIAALKAVGSFIEY 190
>08_02_0493 -
17770723-17770758,17770772-17770996,17771051-17772033,
17772196-17772720,17772801-17772990
Length = 652
Score = 33.5 bits (73), Expect = 0.18
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = +1
Query: 481 ENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTGIIHGMRSTEP---SNHVR 651
+ +V ++ +LK + LE + + ++T N +L +I+ +RS E S+HVR
Sbjct: 546 DQLVLQRAEKLKADKNLENLQISASIKNLGIITSSPNVVLDDVINDLRSMEENRLSDHVR 605
Query: 652 LAATQALLNSLE 687
L+ T+ N+++
Sbjct: 606 LSTTKGFSNNVD 617
>01_06_1801 - 39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 32.3 bits (70), Expect = 0.42
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Frame = +1
Query: 235 ARMAAGLQLKNHLTSKDPTLKQQ-----YQQRWLALAEDVRLYIKENILAAIGTENSRPS 399
A++ G Q + LT+KD +++ + +++ A+ D + K+N LAA G++N PS
Sbjct: 1267 AKIVPGNQSADPLTAKDQSVRAKSIEGRHERSEAAMKPDAQQ--KKNALAANGSDNQMPS 1324
Query: 400 SAAQ 411
S+AQ
Sbjct: 1325 SSAQ 1328
>04_04_1122 +
31052497-31052629,31053133-31053191,31053285-31053579,
31054099-31054279,31054739-31054956,31055522-31055739,
31055842-31055958,31056106-31056128,31056223-31056438,
31056536-31056677,31056822-31057067,31057659-31057856,
31058331-31058379,31060835-31060911,31061266-31061551,
31061661-31061841,31062149-31062344,31062630-31062738,
31062861-31062961,31063155-31063267,31063347-31063442,
31063531-31063746,31063857-31063995,31064087-31064332,
31064605-31064940
Length = 1396
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +1
Query: 319 LALAEDVRLYIKENILAAIGTENSRPSSAAQCVAYVAVAELPVGQWNDLIPILVENVVHV 498
L + + + + E + A IG + P + + E+P+GQ + VE V+H+
Sbjct: 165 LFIGRNFSIAMDEQLAAPIGFNITFPGMLSSVIEMGL--EVPIGQTD------VERVLHL 216
Query: 499 QSTELKKE 522
Q TELK+E
Sbjct: 217 QETELKRE 224
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +1
Query: 31 HKLKNSETMHAETTLTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDV 201
H +KN + H + + L T++ + L RYLD T + +K L DV
Sbjct: 456 HYMKNFDVGHVPLRVAKAKQLLGTINNNFGTLAFCRRYLDRLGETKYLMALKNLCDV 512
>06_02_0024 - 10714741-10716241,10716774-10717840
Length = 855
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 463 LIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTGII 612
L+ +LV VVH +S + T EA DI + T+R N +L GI+
Sbjct: 639 LVLLLVAFVVHQKSQGTQNRRTNEAEVPNTNDIKRKQYTKRKNLMLLGIL 688
>04_03_0869 +
20421368-20421548,20421781-20422664,20422747-20422905,
20423008-20423252,20423360-20423453,20423580-20423768
Length = 583
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 159 HHKFHNIHQNVVRCPLFFP 215
HH H+ H + CP FFP
Sbjct: 223 HHPLHSAHTGMWECPDFFP 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,907,303
Number of Sequences: 37544
Number of extensions: 344284
Number of successful extensions: 1013
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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