Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1987
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)                113   2e-25
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)                 39   0.005
SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12)                  32   0.43 
SB_5254| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_13293| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_12715| Best HMM Match : Adeno_E1A (HMM E-Value=1.3)                 29   4.0  
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_27633| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_21750| Best HMM Match : Dynamin_M (HMM E-Value=0)                   28   9.2  

>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
          Length = 681

 Score =  113 bits (271), Expect = 2e-25
 Identities = 59/113 (52%), Positives = 77/113 (68%)
 Frame = +1

Query: 73  LTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVPFFFQGGNSQVARMAAG 252
           + L ++LE TVSPD  EL+AA +YL+ AA  N   F+ +L  V     G  SQVARMAAG
Sbjct: 1   MDLTKVLEATVSPDLAELQAAQKYLEEAAQVNLPQFLLVL--VNELADGSKSQVARMAAG 58

Query: 253 LQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQ 411
           LQLKN LTSKD  ++ QYQQRWL L ++VR ++K+  LA +G E +RP+ A Q
Sbjct: 59  LQLKNQLTSKDDIVRAQYQQRWLGLDKEVRDHVKKMSLATLGNETARPAIAPQ 111



 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 33/50 (66%), Positives = 38/50 (76%)
 Frame = +1

Query: 562 DAEVLTERSNQILTGIIHGMRSTEPSNHVRLAATQALLNSLEFTRANFGK 711
           + E L   +N+ILT II GMR  EPSNH+RLAAT ALLNSLEFT+ NF K
Sbjct: 112 EPEHLVSHANKILTVIIQGMRKEEPSNHIRLAATTALLNSLEFTKQNFEK 161


>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
          Length = 921

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
 Frame = +1

Query: 223 NSQVARMAAGLQLKNHLTS--KDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRP 396
           NS+ AR A  LQ+ N+  S  +D T+K     +  A AED+ + I  + ++ I   +S P
Sbjct: 235 NSENARHA--LQISNYADSLVRDTTIKAVKDVQTYAFAEDLSIDIIGDAMSEIPQTDSVP 292

Query: 397 SSAAQCVAYVAVAELPVGQW-NDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEV 573
           SS++   +   + E  +  + ++L+  ++EN   V   E  K+        IC D    V
Sbjct: 293 SSSSSSESSELLHEKQLDIFVDELLKEVIENA--VSDVEQIKDFANNLSDIICADSTITV 350

Query: 574 LTER 585
           +TER
Sbjct: 351 ITER 354


>SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12)
          Length = 492

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 4/138 (2%)
 Frame = +1

Query: 292 LKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQCVAYVAVAELPVGQWNDLIP 471
           LK   +  + +  E+V+ +IK   L AIG  +    +    +     A+  +  W  L+P
Sbjct: 88  LKNNVKSHYHSFPEEVKEFIKAECLQAIGDPSPLIRATIGILITTIAAKGDLTNWQQLLP 147

Query: 472 ILVENVVHVQSTELKKEATLEAIGYICQD----IDAEVLTERSNQILTGIIHGMRSTEPS 639
            L + ++  +   +  E +  A+  IC+D    +D++ L    N ++   +   R   P 
Sbjct: 148 TLCQ-LLDSEDYNV-CEGSFGALQKICEDSAEQLDSDALNRPLNVLIPKFLQFFRHASPK 205

Query: 640 NHVRLAATQALLNSLEFT 693
             +RL     L+N + ++
Sbjct: 206 --IRL--VPILVNGMRYS 219


>SB_5254| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/88 (22%), Positives = 36/88 (40%)
 Frame = +1

Query: 235 ARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQC 414
           A    G Q+ N    +    K+       ++AE ++  I E +   +     R  + AQ 
Sbjct: 2   AEHGLGWQMLNEAPRRKEETKKAAVAAGASIAEHIKHAIAEQVKKPVSLGFPRSLTLAQK 61

Query: 415 VAYVAVAELPVGQWNDLIPILVENVVHV 498
           + Y   A    G  +D+ P+L +  +HV
Sbjct: 62  LLYAVPATPVEGTASDITPLLTQLEIHV 89


>SB_13293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +1

Query: 424 VAVAELPVGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEV 573
           +A  ELP GQW +L+ + ++  V  Q    +++   EA+    + I++EV
Sbjct: 2   IAKHELPAGQWPELL-LFLQEYVRSQEAANREDRACEAMEIFDELIESEV 50


>SB_12715| Best HMM Match : Adeno_E1A (HMM E-Value=1.3)
          Length = 909

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = -2

Query: 215 WKKKGTSDNILMNVVKFVVAAWSRYLTA----ASNSFRSGETVFSSICISVNVVSACIVS 48
           WK +G + N  + ++   VA +   L +     ++ F +G+  +  + I + +VSA IV+
Sbjct: 526 WKSRGDASNTEIVMILLAVAFFGVDLASDIKVTADHFIAGDYAYGVLTILLLLVSAVIVN 585

Query: 47  LFLSLCCK 24
           +   LC K
Sbjct: 586 VMSVLCYK 593


>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 881

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 271 LTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENS--RPSSAAQCVAYVAVA 435
           L  K+ +LK+Q+ QR    +  VR  +   ++   GT+ S  +P       A +A A
Sbjct: 284 LNEKERSLKEQFMQRQDKKSAPVRRVVMPTVIPTQGTQQSGPKPDDPVSTAAAIAAA 340


>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +1

Query: 91   LEKTVSPDRNELEAAV-RYLDHAATTNFTTFIKMLSDVPFFFQGGNSQVARMAAGLQLKN 267
            ++++ SP  +++  AV R    AA +     ++ + + P FFQGG        +G +++ 
Sbjct: 1104 VQRSPSPTPDQVFQAVDRRRQPAAPSYHQHMLRKVGNKPQFFQGGGEGNGNAPSGKEVEE 1163

Query: 268  HLTSKDP 288
                +DP
Sbjct: 1164 DSEERDP 1170


>SB_27633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 197 SDNILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSA-CIVSL 45
           SD +L   +  + AAW+ YLT       +   +F+ I I   + S+ C+VSL
Sbjct: 60  SDLLLGLTMNAIYAAWNGYLTEKQKVSATVREIFAWIFIFTAMTSSLCLVSL 111


>SB_21750| Best HMM Match : Dynamin_M (HMM E-Value=0)
          Length = 498

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 226 SQVARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKEN 360
           +Q  +     QL NH+    P L+ + Q   LAL ++V+ Y   N
Sbjct: 274 TQYLQKVLNQQLTNHIKDTLPALRSKLQDNLLALEKEVKGYENYN 318


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,418,328
Number of Sequences: 59808
Number of extensions: 391264
Number of successful extensions: 1147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)