Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1987
(744 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003136-1|AAK21379.3| 896|Caenorhabditis elegans Importin beta... 201 5e-52
Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 4.6
U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in bl... 29 4.6
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 4.6
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 29 4.6
Z81455-6|CAN86597.1| 695|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z81455-5|CAJ90505.1| 611|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z81455-4|CAJ76928.1| 680|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z81455-2|CAD54123.1| 745|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z81455-1|CAB03807.2| 792|Caenorhabditis elegans Hypothetical pr... 28 6.1
AL032637-27|CAN86620.1| 695|Caenorhabditis elegans Hypothetical... 28 6.1
AL032637-26|CAJ90512.1| 611|Caenorhabditis elegans Hypothetical... 28 6.1
AL032637-25|CAJ76956.1| 680|Caenorhabditis elegans Hypothetical... 28 6.1
AL032637-24|CAD54171.1| 745|Caenorhabditis elegans Hypothetical... 28 6.1
AL032637-23|CAA21625.2| 792|Caenorhabditis elegans Hypothetical... 28 6.1
AL032637-1|CAD54169.1| 555|Caenorhabditis elegans Hypothetical ... 28 6.1
>AF003136-1|AAK21379.3| 896|Caenorhabditis elegans Importin beta
family protein 1 protein.
Length = 896
Score = 201 bits (490), Expect = 5e-52
Identities = 106/215 (49%), Positives = 139/215 (64%)
Frame = +1
Query: 79 LIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVPFFFQGGNSQVARMAAGLQ 258
++ +LEKTVS ++N+ + A+ Y+ A +F F++ LS + Q S V R AAGLQ
Sbjct: 9 MLTVLEKTVSQNQNDQKQAMDYIAAACQQDFPVFVQCLSMI-LRTQQCQSFV-RQAAGLQ 66
Query: 259 LKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQCVAYVAVAE 438
LKN L +K+ K Y QRWL L +VR +K+N+ +GTE SRPS AAQCVA +A AE
Sbjct: 67 LKNVLCAKETETKNVYLQRWLQLTAEVREQVKQNVTGTLGTEPSRPSIAAQCVAAIACAE 126
Query: 439 LPVGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTGIIHG 618
LP W ++I +L NV QS E+ KE++LE +GYICQDID VL ++N +LT IIHG
Sbjct: 127 LPQNLWPNVINLLKSNVTESQSGEMLKESSLETLGYICQDIDPRVLETKANDVLTAIIHG 186
Query: 619 MRSTEPSNHVRLAATQALLNSLEFTRANFGKRKRK 723
MR E S +VR AAT ALLNSLEFT NF +
Sbjct: 187 MRPEESSANVRFAATNALLNSLEFTNTNFSNEAER 221
>Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical
protein R06A4.4a protein.
Length = 883
Score = 39.1 bits (87), Expect = 0.003
Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 2/162 (1%)
Frame = +1
Query: 79 LIQILEKTVSPDRN-ELEAAVRYLDHAATTNFTTF-IKMLSDVPFFFQGGNSQVARMAAG 252
+IQ+L+ S DR+ + V+ + F + + +LSD+ +R AG
Sbjct: 13 VIQLLQHAHSTDRDVQRNVQVQLVQLNEHQKFCCYLVYILSDMKEMIDA----TSRSLAG 68
Query: 253 LQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQCVAYVAV 432
L LKN++ +K W +DV+ +++ L +IG + + + V
Sbjct: 69 LLLKNNIRAK-----------WNKYPQDVKFFVRTTCLKSIGDQEPLIRATVGIIVTTIV 117
Query: 433 AELPVGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQD 558
E + W DL+ L V +Q EL +E L A+ + +D
Sbjct: 118 MEENMCDWPDLLDTLA--TVLMQPDELMQEGALGALQKVFED 157
>Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical
protein T05F1.11 protein.
Length = 676
Score = 29.9 bits (64), Expect = 2.0
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Frame = +1
Query: 379 TENSRPSSAAQCVAYVAVAELPV--GQWNDLIPILVENVVHVQSTELKKEATLEAIGYIC 552
+EN P A YV A++ V G +LI ++ + ++ +S EL++ I +
Sbjct: 17 SENDHPPERAND-EYVQFAQISVVSGIQEELIELVKKKLL--ESIELQQFIVGRDIEFQE 73
Query: 553 QDIDA--EVLTERSNQILTGIIHGMRSTEPSNHVRLAATQALLNSLEFTRANFGKRKRKE 726
+ I + + L+ +N I + + H L + + LN L +NFG+R++K
Sbjct: 74 KYIASLTDGLSRYNNHNELEEIRNEKLSSEERHFELESARNKLNGLRIQNSNFGRREQKV 133
Query: 727 TFFL 738
FL
Sbjct: 134 CSFL 137
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 256 QLKNHLTSKDPTLKQQYQQRWLALAEDVRLY 348
QL NH+ PTL+ Q++ A+ +DV Y
Sbjct: 286 QLTNHIRDTLPTLRDSLQKKMFAMEKDVAEY 316
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 256 QLKNHLTSKDPTLKQQYQQRWLALAEDVRLY 348
QL NH+ PTL+ Q++ A+ +DV Y
Sbjct: 286 QLTNHIRDTLPTLRDSLQKKMFAMEKDVAEY 316
>U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 2 protein.
Length = 572
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +2
Query: 29 NINLRIVKQCTQKQH*RLYKYLRRQFHLIEMNWKQQLDTSTMLPPQISQHSSKCCP 196
NINL QC+Q Q + +++Q+ + + N L+ +SQ +C P
Sbjct: 170 NINLEAPAQCSQCQQSCQQQCVQQQYSVQQCNQHCNLECQPTCQQAVSQCQQQCAP 225
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 256 QLKNHLTSKDPTLKQQYQQRWLALAEDVRLY 348
QL NH+ PTL+ Q++ A+ +DV Y
Sbjct: 286 QLTNHIRDTLPTLRDSLQKKMFAMEKDVAEY 316
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 256 QLKNHLTSKDPTLKQQYQQRWLALAEDVRLY 348
QL NH+ PTL+ Q++ A+ +DV Y
Sbjct: 286 QLTNHIRDTLPTLRDSLQKKMFAMEKDVAEY 316
>Z81455-6|CAN86597.1| 695|Caenorhabditis elegans Hypothetical
protein B0399.1f protein.
Length = 695
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -2
Query: 191 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 27
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 183 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 233
>Z81455-5|CAJ90505.1| 611|Caenorhabditis elegans Hypothetical
protein B0399.1e protein.
Length = 611
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -2
Query: 191 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 27
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 99 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 149
>Z81455-4|CAJ76928.1| 680|Caenorhabditis elegans Hypothetical
protein B0399.1d protein.
Length = 680
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -2
Query: 191 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 27
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 168 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 218
>Z81455-2|CAD54123.1| 745|Caenorhabditis elegans Hypothetical
protein B0399.1b protein.
Length = 745
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -2
Query: 191 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 27
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 233 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 283
>Z81455-1|CAB03807.2| 792|Caenorhabditis elegans Hypothetical
protein B0399.1a protein.
Length = 792
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -2
Query: 191 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 27
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 280 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 330
>AL032637-27|CAN86620.1| 695|Caenorhabditis elegans Hypothetical
protein B0399.1f protein.
Length = 695
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -2
Query: 191 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 27
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 183 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 233
>AL032637-26|CAJ90512.1| 611|Caenorhabditis elegans Hypothetical
protein B0399.1e protein.
Length = 611
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -2
Query: 191 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 27
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 99 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 149
>AL032637-25|CAJ76956.1| 680|Caenorhabditis elegans Hypothetical
protein B0399.1d protein.
Length = 680
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -2
Query: 191 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 27
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 168 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 218
>AL032637-24|CAD54171.1| 745|Caenorhabditis elegans Hypothetical
protein B0399.1b protein.
Length = 745
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -2
Query: 191 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 27
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 233 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 283
>AL032637-23|CAA21625.2| 792|Caenorhabditis elegans Hypothetical
protein B0399.1a protein.
Length = 792
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -2
Query: 191 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 27
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 280 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 330
>AL032637-1|CAD54169.1| 555|Caenorhabditis elegans Hypothetical
protein B0399.1c protein.
Length = 555
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -2
Query: 191 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 27
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 43 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,617,004
Number of Sequences: 27780
Number of extensions: 311254
Number of successful extensions: 957
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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