Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1987
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.57 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.0  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.2  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   9.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.2  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 151 HAATTNFTTFIKMLSDVPFFFQGGNSQVARMAA 249
           H   T +TT +  L+ VP +F  GN+   R+ +
Sbjct: 849 HIGFTMYTTCVIWLAFVPLYFGTGNNVALRITS 881


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 163 TNFTTFIKMLSDVPFFFQGGN---SQVARMAAGLQLKNHLT 276
           T +TT I  L+ VP +F  GN   +Q+  +   + L   +T
Sbjct: 711 TMYTTCIIWLAFVPIYFGTGNAHETQITTLCVAISLSATVT 751


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 472 LVLDHSIVLLGAQLLPHTPHTVLLNLDDY 386
           LV    ++ LG  +LPH P++  L   DY
Sbjct: 253 LVTRQKLLELGWDVLPHPPYSPDLAPSDY 281


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 163 TNFTTFIKMLSDVPFFFQGGN---SQVARMAAGLQLKNHLT 276
           T +TT I  L+ VP +F  GN   +Q+  +   + L   +T
Sbjct: 801 TMYTTCIIWLAFVPIYFGTGNAHETQITTLCVAISLSATVT 841


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = +1

Query: 451 QWNDLIPILVENVVHVQSTELKKEATLE 534
           QW+  +P++V+  + +   +L K  T +
Sbjct: 194 QWDPDVPLVVDENIELPQLQLVKNYTAD 221


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 445 VGQWNDLIPILVEN 486
           VG WN L+P   EN
Sbjct: 338 VGCWNSLLPYSPEN 351


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 137 LDTSTMLPPQISQHSSKCCPMS 202
           L+   M+PP I Q S    PM+
Sbjct: 575 LEVQVMVPPTIQQFSFTKLPMN 596


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,317
Number of Sequences: 438
Number of extensions: 3633
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)