Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1986
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 207 1e-54
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 120 2e-28
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 110 2e-25
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 104 1e-23
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 65 8e-12
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 64 1e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 57 2e-09
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 43 5e-05
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 33 0.039
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 28 1.1
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 27 1.9
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 27 2.6
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc... 26 4.5
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.5
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 25 7.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 207 bits (505), Expect = 1e-54
Identities = 98/116 (84%), Positives = 101/116 (87%)
Frame = +3
Query: 162 FPRSWEGPAIRAVMVPGGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHH 341
FP P +MV GMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHH
Sbjct: 31 FPSIVGRPRHHGIMV--GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHH 88
Query: 342 TFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 509
TFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYA
Sbjct: 89 TFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYA 144
Score = 80.2 bits (189), Expect = 3e-16
Identities = 43/61 (70%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Frame = +1
Query: 511 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL-GRS*PHRLPHEDPHPSRGYSFTT 687
SGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDL GR L RGY+F+T
Sbjct: 145 SGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYL--MKILMERGYTFST 202
Query: 688 T 690
T
Sbjct: 203 T 203
Score = 44.8 bits (101), Expect = 1e-05
Identities = 18/21 (85%), Positives = 21/21 (100%)
Frame = +1
Query: 73 DEEVAALVVDNGSGMCKAGFA 135
+EE+AALV+DNGSGMCKAGFA
Sbjct: 2 EEEIAALVIDNGSGMCKAGFA 22
Score = 28.7 bits (61), Expect = 0.84
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 140 DDAPRAVFPSIV 175
DDAPRAVFPSIV
Sbjct: 24 DDAPRAVFPSIV 35
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 120 bits (290), Expect = 2e-28
Identities = 55/116 (47%), Positives = 80/116 (68%)
Frame = +3
Query: 162 FPRSWEGPAIRAVMVPGGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHH 341
FP P +RA G + KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +
Sbjct: 29 FPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDY 88
Query: 342 TFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 509
TF+ +L++ P +LLTE P+NP ANREKM + MFE + +YVAIQAVLSLYA
Sbjct: 89 TFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYA 144
Score = 48.0 bits (109), Expect = 1e-06
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +1
Query: 514 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 618
G ++G+V+DSGDGV+H VP+YE L H + RLD+
Sbjct: 146 GLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDV 180
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 79 EVAALVVDNGSGMCKAGFA 135
E A +V+DNG+G K G+A
Sbjct: 2 ESAPIVLDNGTGFVKVGYA 20
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 110 bits (264), Expect = 2e-25
Identities = 49/97 (50%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Frame = +3
Query: 222 QKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTE 398
QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE
Sbjct: 53 QKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTE 112
Query: 399 APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 509
PL N+EK+ + +ET N PA+ ++Q VL+LYA
Sbjct: 113 PPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYA 149
Score = 54.0 bits (124), Expect = 2e-08
Identities = 23/52 (44%), Positives = 36/52 (69%)
Frame = +1
Query: 466 PPCTSPSKPCSRCTRSGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLG 621
P + +P S RTTGIVL+ GDG++H+VPIY+G+++P AI + ++G
Sbjct: 135 PALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIG 186
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 91 LVVDNGSGMCKAGFA 135
+ +DNGSG KAGFA
Sbjct: 12 ICIDNGSGFIKAGFA 26
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 104 bits (249), Expect = 1e-23
Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Frame = +3
Query: 228 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 404
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 405 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 509
LNP NRE +IMFE+FN +Y+A+QAVL+L A
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAA 167
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +1
Query: 523 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 618
TG V+DSGDGV+H +P+ EGY + +I + L
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPL 211
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 65.3 bits (152), Expect = 8e-12
Identities = 30/80 (37%), Positives = 44/80 (55%)
Frame = +3
Query: 270 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 449
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 450 ETFNTPAMYVAIQAVLSLYA 509
E+ PA Y+A Q + +A
Sbjct: 123 ESLRCPATYLAKQETCAAFA 142
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 64.5 bits (150), Expect = 1e-11
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Frame = +3
Query: 216 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 392
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 393 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 506
TE NP R MT+++FE +N P++ I + S Y
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFY 158
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 520 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLGRS 627
++GIVL+ G+ SH +P+ G + R+ G S
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGS 200
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 57.2 bits (132), Expect = 2e-09
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Frame = +3
Query: 225 KDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 398
++ YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 49 RNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108
Query: 399 APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 509
NP++ R+++ + FE + PA Y+ QAV +A
Sbjct: 109 PSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFA 145
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 42.7 bits (96), Expect = 5e-05
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +3
Query: 285 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 452
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 453 TFNTPAMYVAIQAVLSLYAFRSYH 524
P +A + ++ LYA H
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILH 195
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 33.1 bits (72), Expect = 0.039
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 345 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAFRS 518
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + + A+ L
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQHLNIQAV 1458
Query: 519 YHRY 530
H Y
Sbjct: 1459 NHAY 1462
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 162 FPRSWEGPAIRAVMVPGGMGQKDSYVGDEAQSKRGILTLKYPIEH 296
FP +GP+I+ +PG G+ +E I +K+P+++
Sbjct: 14 FPNEPQGPSIKTETIPGPKGKA---AAEEMSKYHDISAVKFPVDY 55
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 529 IVLDSGDGVSHTVPIYEGYALPHAILRLDLG 621
+V+DSG +H +P+ + A+ R+D+G
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVG 189
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 27.1 bits (57), Expect = 2.6
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 13/78 (16%)
Frame = -1
Query: 302 DSVFDGVFEGQDTSFALCLIS-----YIRVLLSHPPR--------DHHGPDGGAFPRSRE 162
D D +F G D + +CLIS + VLL+ DHHGP GA S
Sbjct: 129 DPCLDDLFGGYDWAPGICLISCWFILLLEVLLNRYVEWRFGMEIGDHHGPTLGAKQHSHS 188
Query: 161 TLREEHHLNAKPALHIPE 108
H ++ P I E
Sbjct: 189 HEDGAHGVHEHPVYDIEE 206
>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 4.5
Identities = 21/89 (23%), Positives = 39/89 (43%)
Frame = +3
Query: 267 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 446
+L K + I ++D+ K + +E V + LL E LN +ANR MT+ +
Sbjct: 188 LLNHKSQVAEFISYHFDEFFKQYTVLLKSENYVTKRQSLKLLGEILLN-RANRSVMTRYI 246
Query: 447 FETFNTPAMYVAIQAVLSLYAFRSYHRYR 533
N M + ++ F ++H ++
Sbjct: 247 SSAENLKLMMILLRDKSKNIQFEAFHVFK 275
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 387 LLTEAPLNPKANREKMTQIMFETFN 461
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 230 VLLSHPPRDHHGPDGGAFPRSRETLREEHHLNAKPALHIPEPLSTTNAATSS-SHILN 60
++ P + D A + +ET R+E AK AL ST + ++ SH L+
Sbjct: 162 IITIQDPHNVENRDFSAIQKQKETARDEKITKAKIALQASRAKSTESTSSPELSHSLD 219
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,361
Number of Sequences: 5004
Number of extensions: 61521
Number of successful extensions: 212
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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