Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1986
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.6  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    21   8.4  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   8.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 146 HHLNAKPALHIPEPLSTTNAATSSS 72
           HHL+    +  PEP  ++ ++T SS
Sbjct: 342 HHLHVAKQMASPEPPKSSESSTGSS 366


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 357  LRVAPEEHPVLLTEAPLNPKANREKM 434
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 646 EVVCEVTTGPSPDAGWR 596
           E+ C+VT  P P   WR
Sbjct: 329 EIKCDVTGTPPPPLVWR 345


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 512 ERVQREHGLDGDVHGG 465
           +RV  ++G+ GD +GG
Sbjct: 62  QRVYDKNGMTGDAYGG 77


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/34 (29%), Positives = 12/34 (35%)
 Frame = -1

Query: 209 RDHHGPDGGAFPRSRETLREEHHLNAKPALHIPE 108
           R H G      P   +    +HHL     LH  E
Sbjct: 2   RTHTGEKPFECPECHKRFTRDHHLKTHMRLHTGE 35


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 471 MYVAIQAVLSLYAFRSYHRYRAGLRRRCLPHRAHLRGIRTPPRHP 605
           +Y   ++  SL A +++HR        C P   +L  I + P HP
Sbjct: 53  LYSGTRSSESLTA-QAHHRLYPAFSSSCDPVPGNLEQIGSRPLHP 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,109
Number of Sequences: 438
Number of extensions: 4830
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)