Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1985
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 298 4e-82
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 170 1e-43
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 167 1e-42
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 138 7e-34
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 103 2e-23
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 93 3e-20
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 91 2e-19
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 53 3e-08
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.092
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.37
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.86
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 27 2.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.6
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc... 27 3.5
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 4.6
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.6
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 6.0
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces... 26 6.0
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 6.0
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 26 6.0
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 6.0
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 25 8.0
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 8.0
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 8.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 298 bits (732), Expect = 4e-82
Identities = 144/176 (81%), Positives = 151/176 (85%)
Frame = +2
Query: 116 DEEVAALVVDNGFGMCKAGFAGDDAPRAVFPSIVGKRGPPSGRDGRYGTEGLLCRR*GQS 295
+EE+AALV+DNG GMCKAGFAGDDAPRAVFPSIVG R G G + QS
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVG-RPRHHGIMVGMGQKDSYVGDEAQS 60
Query: 296 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 475
KRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMT
Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMT 120
Query: 476 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVFHTVPIYEGYALPHAIL 643
QI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV HTVPIYEGYALPHAI+
Sbjct: 121 QIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIM 176
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1
Query: 649 LDLTGRDLTDYLMK 690
LDL GRDLTDYLMK
Sbjct: 178 LDLAGRDLTDYLMK 191
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 170 bits (414), Expect = 1e-43
Identities = 85/176 (48%), Positives = 119/176 (67%), Gaps = 7/176 (3%)
Frame = +2
Query: 134 LVVDNGFGMCKAGFAGDDAPRAVFPSIVGK----RGPPSG--RDGRYGTEGLLCRR*GQS 295
+ +DNG G KAGFAGDD P+ +FP+ VG+ R PS +D G+E Q+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEA-------QN 64
Query: 296 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKM 472
RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+
Sbjct: 65 LRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKI 124
Query: 473 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVFHTVPIYEGYALPHAI 640
+ +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG+ H+VPIY+G+++P AI
Sbjct: 125 AEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAI 180
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 167 bits (407), Expect = 1e-42
Identities = 78/174 (44%), Positives = 116/174 (66%), Gaps = 1/174 (0%)
Frame = +2
Query: 122 EVAALVVDNGFGMCKAGFAGDDAPRAVFPSIVGKRG-PPSGRDGRYGTEGLLCRR*GQSK 298
E A +V+DNG G K G+A D+ PR FPSIVG+ + G + ++ ++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 299 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 478
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 479 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVFHTVPIYEGYALPHAI 640
MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV H VP+YE L H +
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLV 175
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 138 bits (334), Expect = 7e-34
Identities = 79/199 (39%), Positives = 109/199 (54%), Gaps = 30/199 (15%)
Frame = +2
Query: 134 LVVDNGFGMCKAGFAGDDAPRAVFPSIVGKR------GPPSGRDGRY----GTEGLLCRR 283
+++DNG G K G+AG+DAP VFP+++ R GP Y G+ L +R
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKR 67
Query: 284 *GQSKRGIL------------TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 427
+ + +L YPI HG + NWD ME+ W + + LR PE+H L
Sbjct: 68 ATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFL 127
Query: 428 LTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSG 583
LTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSG
Sbjct: 128 LTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSG 187
Query: 584 DGVFHTVPIYEGYALPHAI 640
DGV H +P+ EGY + +I
Sbjct: 188 DGVTHIIPVAEGYVIGSSI 206
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 103 bits (248), Expect = 2e-23
Identities = 61/172 (35%), Positives = 92/172 (53%), Gaps = 2/172 (1%)
Frame = +2
Query: 119 EEVAALVVDNGFGMCKAGFAGDDAPRAVFPSIVGKRGPPSGRDGR--YGTEGLLCRR*GQ 292
+EV+A+V+D G + GF+G+D P+ V PS G+ DGR +G E + +
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFS-----DGRRLFGEEYIY-----K 58
Query: 293 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 472
S G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K
Sbjct: 59 SNPG-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKT 117
Query: 473 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVFHTVPIYEGYAL 628
+ MFE+ PA Y+A Q + +ASG+ T ++D G IY+G+ L
Sbjct: 118 LETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 93.5 bits (222), Expect = 3e-20
Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 4/177 (2%)
Frame = +2
Query: 134 LVVDNGFGMCKAGFAGDDAPRAVFPSIVGKRGPPSGRDGRYGTEGLLCRR*GQSKRGILT 313
LV+DNG +AG+ G+ P+ VF ++V + RD + L + G +
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRY-----RDRKLSRTSTLVGNDTLIEVGSRS 81
Query: 314 L-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 490
+ + P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 82 IARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFE 140
Query: 491 TFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVFHTVPIYEG-YALPHAILASW 652
+N P++ I + S Y + + ++GIVL+ G+ H +P+ G L A SW
Sbjct: 141 LYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISW 197
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 90.6 bits (215), Expect = 2e-19
Identities = 47/174 (27%), Positives = 91/174 (52%)
Frame = +2
Query: 119 EEVAALVVDNGFGMCKAGFAGDDAPRAVFPSIVGKRGPPSGRDGRYGTEGLLCRR*GQSK 298
EE+ +LV+D G + G+AG+++P + PS G R +GR+ +Y + L +
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGVRSDVTGRN-KYVVDELQIH----AP 62
Query: 299 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 478
+ +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++ +
Sbjct: 63 IPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIME 122
Query: 479 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVFHTVPIYEGYALPHAI 640
FE + PA Y+ QAV +A+ ++T +++D G P+ +G + I
Sbjct: 123 AAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGI 176
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 53.2 bits (122), Expect = 3e-08
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Frame = +2
Query: 323 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 490
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 491 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVFHTVPIYEG 619
P +A + ++ LYA G G+V+D G PI +G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.092
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 383 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 526
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.37
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +3
Query: 507 PCTSPSKPCSRCTRPVVPPVSCWTPATVSSTPCPSTKDTHFPTPS 641
P T+P P T PV P S P+ P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 27.9 bits (59), Expect = 1.5
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Frame = +3
Query: 504 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSS-----TPCPSTKDTHFPTPSLRL-GLNRS 665
PP +P P P VPP S P S P P+ K P PS ++
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252
Query: 666 RPH-RLPHERSSPS 704
R PH +SPS
Sbjct: 1253 RSSVPSPHSNASPS 1266
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 0.86
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 249 PSRPDGGPLFPTIEGNTARGASSPAKPAL 163
P P G P PT NT + P+ PAL
Sbjct: 73 PPVPTGAPSLPTSSNNTQQAEERPSMPAL 101
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 27.5 bits (58), Expect = 2.0
Identities = 22/67 (32%), Positives = 28/67 (41%)
Frame = +3
Query: 504 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSSTPCPSTKDTHFPTPSLRLGLNRSRPHRLP 683
PP +PS S+ T+ VP + S P K + PT S + N P RL
Sbjct: 400 PPLATPSSRNSKSTQSAVPENVSRFDSNEPSATSPILKRSS-PTDS--ISQNSGLPSRLT 456
Query: 684 HERSSPS 704
SSPS
Sbjct: 457 EPISSPS 463
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = -2
Query: 270 SPSVPYRPSRPDGGPLFPTIEGNTARGASSPAKPALHIPKPLSTTNAATSSS 115
S SVPY + PL T N S P PL+TTN TS+S
Sbjct: 430 STSVPYTSTPVTSTPLATT---NCTTSTSVPYTSTPVTSTPLTTTNCTTSTS 478
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = -2
Query: 270 SPSVPYRPSRPDGGPLFPTIEGNTARGASSPAKPALHIPKPLSTTNAATSSS 115
S SVPY + PL T N S P PL+TTN TS+S
Sbjct: 453 STSVPYTSTPVTSTPLTTT---NCTTSTSIPYTSTPVTSTPLTTTNCTTSTS 501
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -2
Query: 270 SPSVPYRPSRPDGGPLFPTIEGNTARGASSPAKPALHIPKPLSTTNAATSSSHILN 103
S S+P P+ P+ PT+ + S+P P P ST++ TSSS +L+
Sbjct: 342 STSIP--PTGNSTTPVTPTVPPTSTSSTSTP-------PPPASTSSTGTSSSPLLS 388
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 495 STRPPCTSPSK--PCSRCTRPVVPPVSCWTPATVSSTPCPSTKDT 623
ST CT+ + P T PV P V P T SSTP +T T
Sbjct: 388 STSTSCTTSTSIPPTGNSTTPVTPTV----PPTSSSTPLTTTNCT 428
Score = 26.2 bits (55), Expect = 4.6
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = +3
Query: 483 CSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWT---PATVSSTPCPSTKDTHFPTPSLRLG 653
C+ ++ PP T S S P VPP S + P +ST T + PT S
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCT 230
Query: 654 LNRSRP 671
+ S P
Sbjct: 231 TSTSIP 236
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Frame = +3
Query: 483 CSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWT---PATVSSTPCPSTKDTHFPTPSLRLG 653
C+ ++ PP T S S P VPP S + P +ST T PT S
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCT 173
Query: 654 LNRSRP 671
+ S P
Sbjct: 174 TSTSIP 179
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/50 (30%), Positives = 19/50 (38%)
Frame = -2
Query: 264 SVPYRPSRPDGGPLFPTIEGNTARGASSPAKPALHIPKPLSTTNAATSSS 115
+ P P+ P P N S P PL+TTN TS+S
Sbjct: 406 TTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
Score = 25.4 bits (53), Expect = 8.0
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +3
Query: 492 HSTRP--PCTSPSKPCSRCTRPVVPPVSCWTPATVSSTPCPSTKDTHFPTPSLRLGLNRS 665
+ST P P P+ S T P PP S + T SS+P PST + + S+ N +
Sbjct: 296 NSTTPVTPTVPPTSTSSTSTPP--PPASTSSTGT-SSSPLPSTSTSCTTSTSIPPTGNST 352
Query: 666 RP 671
P
Sbjct: 353 TP 354
>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 170 GFAGDDAPRAVFPSIVGKRGPPSGRDGRYGTEGLLCRR*G 289
G G P + P ++G+R P G+D +E ++ + G
Sbjct: 181 GVLGFRDPNGIRPLVIGERDTPEGKDYMLASESVVLTQFG 220
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +3
Query: 528 PCSRCTRPVVPPVSCWTPATVSSTPCPSTKDTHFP 632
PC+ + PPV+C TP C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 425 LLTEAPLNPKANREKMTQIMFETFN 499
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 161 TYRSHCLLPTRQLLRRTS*ISEI 93
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 508 HVRRHPSRALAVRVRSYHRYRAGLRRRCLPHRAHLRRIRTSPR 636
+VR HP A+ +R H Y +G C+ ++ R+ +P+
Sbjct: 248 YVRLHPGEAVFLRALDPHAYVSGNIIECMAASDNVIRLGFTPK 290
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = -2
Query: 282 LLHKSPSVPYRPSRPDGGPLFPTIEGNTARGASSPAKPALHIPKPLSTTNAATSSS 115
L+ K+PS PY SRP +A ASSP + A PK T ++ SS
Sbjct: 309 LISKAPSYPYSSSRPSA----------SASLASSPTRSAFR-PKTSETVSSEVVSS 353
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.8 bits (54), Expect = 6.0
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -2
Query: 270 SPSVP-YRPSRPDGGPLFPTIEGNTARGASSPAKP-ALHIPKPLSTTNAATSSSHI 109
SP+V +P G PL+PT T+ ASS + P + +P S + +S++I
Sbjct: 104 SPAVSNMQPPTQGGQPLYPTNFFTTSVSASSDSFPNSPTVPSKFSLNPSVATSTNI 159
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +3
Query: 495 STRPPCTSP-SKPCSRCTRPVVPPVSCWTPATVSSTPCPSTKD--THFPTPS 641
S+RPP S S P T P+ PPV S+TP S D T +P S
Sbjct: 170 SSRPPVLSNGSFPRQTNTAPLNPPVHLKDNIRNSATPSTSQADIPTQYPINS 221
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 284 ISYIRVLLSHTDHHALMAGPFF 219
+ ++ L H++HH + AG FF
Sbjct: 323 LDLLKSFLDHSNHHGVRAGVFF 344
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 439 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 588
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 7 GKNFRYLFLTVSSHCRAV*FSSCHTYILLISLIQDVRRRSCRVGSRQWL 153
G+++ F++ S C+ + F +CH Y + S +QD G WL
Sbjct: 409 GEDWLSEFMSACSDCK-IDFIACHWYGIDFSNLQDYINSLANYGLPIWL 456
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,247,554
Number of Sequences: 5004
Number of extensions: 74727
Number of successful extensions: 275
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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