Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1985
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    26   0.30 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    26   0.30 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.70 
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    24   1.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 581 GDGVFHTVPIYEGYALPHAILASWT 655
           G GVF   PI++G      +L+ WT
Sbjct: 87  GLGVFKIAPIFKGIGYATCVLSCWT 111


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 581 GDGVFHTVPIYEGYALPHAILASWT 655
           G GVF   PI++G      +L+ WT
Sbjct: 140 GLGVFKIAPIFKGIGYATCVLSCWT 164


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 494 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGD-GVFHTVPIYEGYALPHAILASW 652
           F  P     + A + ++      G +L  G  GVF   P+++G     A+++ W
Sbjct: 19  FLIPYFLTLVLAGIPMFFMELALGQMLTVGGLGVFKIAPLFKGIGYAAAVMSCW 72


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 152 FGMCKAGFAGD 184
           FGMCK G +GD
Sbjct: 129 FGMCKEGISGD 139


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 395  LRVAPEEHPVLLTEAPLNPKANREKM 472
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 538 AVRVRSYHRYRAGLRRRCLPHRAHLRRIRTSPRHP 642
           ++  +++HR        C P   +L +I + P HP
Sbjct: 62  SLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHP 96


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 43  SHCRAV*FSSCHTYILLISL 102
           SHC  + F+S   +ILL+ +
Sbjct: 77  SHCMTITFASFLLFILLVQI 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,691
Number of Sequences: 438
Number of extensions: 5259
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)