Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1981
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    47   2e-06
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    35   0.008
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    35   0.011
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2...    28   1.2  
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ...    26   4.9  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    26   4.9  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    25   6.5  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    25   8.6  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.6  
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.6  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   8.6  

>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = -3

Query: 340 LYCSACNKLFKNVKSFENHENSKKHKENVAKM 245
           + C  CNK F++    ENHENSKKHK+N+ KM
Sbjct: 270 IMCMVCNKNFRSQNQLENHENSKKHKKNLRKM 301


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 35.1 bits (77), Expect = 0.008
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 337 YCSACNKLFKNVKSFENHENSKKHKENVAKM 245
           YC  C K F  +  FE H+ SK H + V +M
Sbjct: 244 YCEVCQKFFGKITVFEAHKKSKAHNKAVKRM 274


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -3

Query: 334 CSACNKLFKNVKSFENHENSKKHKENVAK 248
           C  CNK F +  ++ +H  SKKH++N++K
Sbjct: 72  CEVCNKKFYSEGAYSSHMASKKHRDNLSK 100



 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 334 CSACNKLFKNVKSFENHENSKKHKENVAKMTLDDDI 227
           C  CN+ FK++++   H   K H  ++A  T D+ +
Sbjct: 261 CLTCNREFKSLEAVRAHMQQKGH-TSIAYDTEDEQL 295


>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 304

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 337 YCSACNKLFKNVKSFENHENSKKH 266
           YCSAC K  ++   F+ H  S+ H
Sbjct: 27  YCSACQKQMRDENGFKCHTQSEGH 50


>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 246

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -3

Query: 301 KSFENHENSKKHKENVAKMTLDDDIGVWIQ 212
           ++F N  +   HK N+     +  +G+WI+
Sbjct: 32  EAFNNDHSGLIHKYNIRNKYFEASVGIWIE 61


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 334 CSACNKLFKNVKSFENHENSKKHKENV 254
           C  C K F ++   + HE+S  H E +
Sbjct: 422 CCYCTKPFLSISKLQEHESSCSHVERL 448


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -2

Query: 176 TPATQEGPREPVKINGLTEDEKEPLGNSTSDIEDNDIRET 57
           TPA +E   E  KI     D       S SD E+N+   T
Sbjct: 6   TPANEEKEEESEKIQKSPVDTPHTPNGSVSDNEENETSST 45


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 119 DEKEPLGNSTSDIEDNDIRETLSDDSGKVKPLPK 18
           + K P    +++ ED  I ET S+ + K KP P+
Sbjct: 215 ESKSPSQKESNESEDIQIAETPSNVTPKKKPSPE 248


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 152 REPVKINGLTEDEKEPLGNSTSDIEDNDIRETLSDDSGKVKPLPKW 15
           RE V+ N  + DE++    + +   DN   +T  DDSG+     +W
Sbjct: 46  REKVESNPNSSDEEDLTSTNNTRSSDNTTSDT-EDDSGEDSYQVEW 90


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 322 NKLFKNVKSFENHENSKKHKENVAKMTLDDDI 227
           NKL K     E+ EN+KK  E + K + + ++
Sbjct: 72  NKLTKLKAPIEDMENTKKELEEIRKQSTETEL 103


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 173 PATQEGPREPVKINGLTEDEKEPLGN-STSDIEDNDIRETLSD 48
           P T +  R+PVK +  T+D +  L    TS  E+  IR+ L D
Sbjct: 407 PITNQETRKPVKFSKPTKDIRSRLKEVPTSTDEEFIIRQELMD 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,795,878
Number of Sequences: 5004
Number of extensions: 27873
Number of successful extensions: 109
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)