Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1981
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0454 + 19199063-19200757,19202201-19202287                       48   4e-06
02_05_1271 + 35368315-35369085,35369319-35369414                       35   0.044
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815...    33   0.24 
08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151     31   0.72 
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89...    30   1.7  
09_04_0219 - 15774809-15775198                                         29   2.2  
04_04_0778 + 28019924-28020553,28020657-28020797,28021359-28021454     29   2.2  
06_01_0784 - 5868545-5868888,5868990-5869085,5870313-5870394,587...    29   2.9  
10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393     29   3.8  

>12_02_0454 + 19199063-19200757,19202201-19202287
          Length = 593

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = -3

Query: 340 LYCSACNKLFKNVKSFENHENSKKHKENVAKMTL 239
           LYC ACNK FK+ K ++NHE SKKH++ V+++ +
Sbjct: 310 LYCVACNKKFKSDKQWKNHEQSKKHRDKVSELRM 343


>02_05_1271 + 35368315-35369085,35369319-35369414
          Length = 288

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -2

Query: 161 EGPREPVKINGLTEDEKEPLGNSTSDIEDNDIRETLSDDSGKVKPLPKWFFFK 3
           EG  E V++      E++P+G +    E+ D RE  +    +V+ L  W F++
Sbjct: 2   EGKEEDVRLGANRYTERQPIGTAAQGAEEKDYREPPAAPVFEVEELTSWSFYR 54


>01_06_0213 + 27580635-27581105,27581206-27581298,27581376-27581540,
            27581640-27581862,27582329-27582429,27582666-27582713,
            27583086-27583172,27583745-27583879,27583985-27584140,
            27585336-27585545,27585641-27586351,27586429-27586974,
            27587872-27588495,27588595-27588699,27590460-27590711,
            27590939-27591766
          Length = 1584

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = -3

Query: 337  YCSACNKLFKNVKSFENHENSKKHK----ENVAKMTLDDDIGVWIQMLMMK 197
            +CS+C+K FK++ +F +H +  K K     N    T D  + + +++L ++
Sbjct: 1135 HCSSCHKNFKSIHNFSDHASQCKDKLRTDHNWKMQTADHSVPIGVRLLKLQ 1185


>08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151
          Length = 124

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 337 YCSACNKLFKNVKSFENHENSKKHKENVAKMT 242
           YC  C++ F +    E H  SK+HK+ + +M+
Sbjct: 65  YCLHCDRYFASESVKEEHYRSKRHKKRIKQMS 96


>04_01_0082 +
           897026-897028,897101-897350,898454-898608,898686-898967,
           899078-899160,899335-899485,899896-899952,900279-900479
          Length = 393

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 337 YCSACNKLFKNVKSFENHENSKKH 266
           +CS CNK +K    FE+H +S  H
Sbjct: 203 FCSLCNKQYKLAHEFESHLSSYDH 226


>09_04_0219 - 15774809-15775198
          Length = 129

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 334 CSACNKLFKNVKSFENHENSKKHKENVAKMT 242
           C+ C+K F + ++   H+N+ K + +VAK T
Sbjct: 38  CTYCDKKFYSSQALGGHQNAHKFERSVAKRT 68


>04_04_0778 + 28019924-28020553,28020657-28020797,28021359-28021454
          Length = 288

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = -2

Query: 161 EGPREPVKINGLTEDEKEPLGNSTSDIEDNDIRETLSDDSGKVKPLPKWFFFK 3
           EG  E V++      E++P+G +    +D D +E       +   L  W F++
Sbjct: 2   EGKEEDVRLGANKFSERQPIGTAAQGSDDKDYKEPPPAPLFEPGELKSWSFYR 54


>06_01_0784 -
           5868545-5868888,5868990-5869085,5870313-5870394,
           5870639-5870839,5871810-5871818
          Length = 243

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -3

Query: 343 NLYCSACN-KLFKNVKSFENHENSKKHKENVAK 248
           N +C  C   +  N  S   HE  K+HK+NV K
Sbjct: 10  NKWCDFCKIYIANNPLSIRTHEIGKRHKDNVTK 42


>10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393
          Length = 278

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 340 LYCSACNKLFKNVKSFENHENSKKHKENVA 251
           LYC  CN       +   HE  +KH++ VA
Sbjct: 191 LYCGVCNVKCMTRFNLREHEAGRKHRDKVA 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,549,234
Number of Sequences: 37544
Number of extensions: 151538
Number of successful extensions: 469
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)