Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1980
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 83 5e-17
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 4e-06
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 29 0.64
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 26 4.5
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 26 4.5
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 6.0
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 26 6.0
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 25 7.9
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 25 7.9
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 25 7.9
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 25 7.9
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo... 25 7.9
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 25 7.9
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 82.6 bits (195), Expect = 5e-17
Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Frame = +1
Query: 217 IIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKST 396
+++QVE+YF D NL DKFL + +DGWVP++ + F R+ + + + I NAL KS
Sbjct: 67 VLKQVEFYFSDTNLPHDKFLWTTSQKNDGWVPIQTIANFKRMRRF-QPLEAIVNALRKSP 125
Query: 397 SGLLEVSEDNKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFA--KDASLDDLLNYFKQ- 567
LLEV E +KVRR PL ++ K + RS+Y KGF KD + L +F++
Sbjct: 126 E-LLEVDEAGEKVRR--MIPLVRVD---NKSVMERSVYCKGFGDEKDDTQIALEKFFEEN 179
Query: 568 FQEVENVIMRRYVEKSTKETLVQGF 642
+ V MRR +K K ++ F
Sbjct: 180 AGPISAVRMRRDDDKKFKGSVFVEF 204
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 46.4 bits (105), Expect = 4e-06
Identities = 24/66 (36%), Positives = 40/66 (60%)
Frame = +1
Query: 226 QVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGL 405
Q+EYYF NL +D FL++ + D+G+VPL L FNR+ + D +++ A S +
Sbjct: 332 QLEYYFSIENLCKDMFLRKHMD-DEGYVPLAFLASFNRIKSFSTDLNLLHAAC--KASDI 388
Query: 406 LEVSED 423
++V+ D
Sbjct: 389 IDVAID 394
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 29.1 bits (62), Expect = 0.64
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Frame = +1
Query: 241 FGDVNLHRDKFLQEQIKLDDGWVPL--EILTKFNRLAKLTE----DTDVIANALNKSTSG 402
+ +N + KFL + K + L E+ TK +++L E D + L+ ++
Sbjct: 235 YSSLNANTQKFLDDLDKEIFSQIQLAEELQTKLGTVSELVESVPNDVAEVQRRLSSVSTA 294
Query: 403 LLEVSEDNKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASLDDLLNYFKQFQE 576
LL S++ + +R ++ N + I + AS D L+NYF+QF E
Sbjct: 295 LLIDSDEIETTKRVVDEDTS--NARISSRILDVFKTPGATYPFASNDPLMNYFEQFTE 350
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 310 PLEILTKFNRLAKLTEDTDVIANALNKSTSGL---LEVSEDNKKVR 438
P+ I TK R A + + +A LN+ TSG+ L + N+ VR
Sbjct: 617 PVLITTKIKRNANIWDLQKHLAGLLNRDTSGIRIWLMTNRQNRTVR 662
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 424 NKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASL 540
N V R N++ KE+ NR + KGFA D S+
Sbjct: 543 NSAVLRRQSSQSSGANDD--KEVRNRKVVEKGFANDCSV 579
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 116 MTEDKEVTVETNGQEENAKTENSEDE 193
+ ED V + +E N + EN+EDE
Sbjct: 464 LVEDTSVDISATLEEANTQQENAEDE 489
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 299 SSNFICSCRNLSRC 258
S NF+CSCR S C
Sbjct: 7 SRNFLCSCRGFSVC 20
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 25.4 bits (53), Expect = 7.9
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Frame = +1
Query: 244 GDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSED 423
GDV + KFL +++ + + L LT + + K + + V + T LL+++ D
Sbjct: 41 GDVGRNSIKFLNKRLDTANANIQLLALTLTDAIVKNCKTSIVREISSRTFTDSLLKIASD 100
Query: 424 NKKVRRNPEQPLPEMNE--ELRKEICNRSIYAKGFAKDASLD 543
+ R + +NE E+ K+ N S+ K LD
Sbjct: 101 STTHNRVRSRIAVLVNEWAEIMKKDPNMSLMQDICEKIRKLD 142
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +1
Query: 442 NPEQPLPEMNEELRKEICN---RSIYAKGFAKDASLDDLLN 555
NPE P+P EEL + N +S + F+ LD ++N
Sbjct: 132 NPENPVPPSTEELANMLSNPMVQSSINEMFSNPQMLDMIIN 172
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/67 (26%), Positives = 27/67 (40%)
Frame = +1
Query: 319 ILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELRKEICN 498
I+ K N + L D+I + SGLLE + VR + + + K IC
Sbjct: 242 IVRKSNSVYMLVTSKDIIRFVIPLMASGLLEAHKVQSIVRDSNPMFITLPLSAIAKHICQ 301
Query: 499 RSIYAKG 519
+ KG
Sbjct: 302 FLLRTKG 308
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 7.9
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 13/81 (16%)
Frame = +1
Query: 424 NKKVRRNPEQPLPEMN----------EELRKEICNRSIYAK--GFAKDASLDDLLNY-FK 564
N+ VRR PE+P +N EE RK IC Y + GF +D + LL+Y
Sbjct: 91 NELVRRFPERPPSRLNKIQVMILSLIEEWRKTICRVDRYKEDLGFIRD--MHRLLSYKGY 148
Query: 565 QFQEVENVIMRRYVEKSTKET 627
F E++ + +KS +T
Sbjct: 149 TFPEIDKENLAVLSQKSVLKT 169
>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -2
Query: 304 IRHLILFVLAEIYLDVDLHHQNNIRLA 224
I +++ F +Y+D+D+HH + ++ A
Sbjct: 177 ILNMLRFFPRVLYIDIDIHHGDGVQQA 203
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 143 ETNGQEENAKTENSEDETELDIGPGLF 223
E E AK E + +E++ D+G GLF
Sbjct: 83 EATSAAEEAKEEEAAEESDEDMGFGLF 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,808
Number of Sequences: 5004
Number of extensions: 55998
Number of successful extensions: 194
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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