Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1979
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 29 0.49
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 27 2.0
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 2.0
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 27 2.6
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr... 27 3.4
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 26 4.5
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 25 7.9
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 25 7.9
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 25 7.9
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 22 9.9
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 29.5 bits (63), Expect = 0.49
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = -2
Query: 663 DGFVEVLPYDAV-----HKRLERVGVLAVDVHDWAAAALFSQT 550
DGFV++LPYD V + L R+G+ + W A F +T
Sbjct: 247 DGFVKILPYDRVFSDAKNSNLTRIGISSKT--SWCIATSFGET 287
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 205 RRSLFRTGQKPKTYPFFFKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSF 363
RR L G +T+P F + S+ P +LIVN + + WT +D +
Sbjct: 95 RRDLM--GMIARTFPEF-SSVNSLSPSLFQLIVNRMRFDAIHPEWTNGSDDEY 144
>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 397 YLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYV 525
YL+ +L PN Y Q A + +DY E IRI+E V
Sbjct: 32 YLLRSLLANVPNALYHSQLQAACQKFQDYCDLEEIRIIEAKRV 74
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 644 SHMTRFTNDSNELVYSLWMFMIGQ 573
SH +F ND E Y W F+ Q
Sbjct: 203 SHTYKFVNDKGEFYYCKWHFITNQ 226
>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 162
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 526 GMNNEYRISLAKKGGGCPIMNIHS 597
G++NE I L +K G CP + I+S
Sbjct: 105 GLSNENLIKLTQKSGECPPLYINS 128
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +1
Query: 283 DTMKLIVNWSGK-EFLRETW---TRFVEDSFPIVNDQEVMDVY 399
D ++ + W K + ++ W T E SFP++ND+E + V+
Sbjct: 230 DDLETLPKWPDKVKKMQRNWIGRTTGFEISFPLLNDKETLTVF 272
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = +2
Query: 44 LNSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQ 163
+ Y PT R Y+ L+KN K HL + Q
Sbjct: 170 MKGYNPTAAREAHGLGMYFLAYEALVKNTMAKHHLTDRSQ 209
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/33 (24%), Positives = 19/33 (57%)
Frame = -2
Query: 504 SDYFVGHVVFFPPKSVLSEELVAPVGACGFEVG 406
+D GH + PP+ + +++A + +C ++G
Sbjct: 558 ADLKFGHYMKLPPRIMFYTQMIATIWSCFVQIG 590
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 568 GGCPIMNIHSEYTNSFESFVNRVIWENFYKPIGLHRHRLLPK 693
GG P+ + SE + F ++ I+E +YK + + + LL K
Sbjct: 399 GGKPLKEVFSEILDLFRYIASKDIFEAYYK-LDIAKRLLLNK 439
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 22.2 bits (45), Expect(2) = 9.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 376 DQEVMDVYLVANLKPTRPNRCYKFLAQHALR 468
D +++ ++ + P P KFLA ALR
Sbjct: 281 DLDLVQIHPTGFVDPKDPTALTKFLAAEALR 311
Score = 21.0 bits (42), Expect(2) = 9.9
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +1
Query: 478 DYVPHEVIRIVEPSYVGMNN 537
DYV E++++ P Y+ +N+
Sbjct: 333 DYVTGEMMKLKSPVYLVLNS 352
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,454
Number of Sequences: 5004
Number of extensions: 67498
Number of successful extensions: 209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -