Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1979
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0570 + 10786779-10787144,10787353-10787547,10787647-107878...    28   6.2  
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    28   6.2  
04_04_0437 + 25193263-25194627                                         28   8.3  
01_07_0242 + 42234217-42234320,42234708-42235029,42235377-422357...    28   8.3  

>09_02_0570 +
           10786779-10787144,10787353-10787547,10787647-10787826,
           10787925-10788119,10789629-10789727,10789822-10790328,
           10790438-10790779
          Length = 627

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/61 (24%), Positives = 33/61 (54%)
 Frame = +1

Query: 238 KTYPFFFKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVANLK 417
           KT+ FFF +IR ++   +K+ ++ + K+F ++   R     F  +  ++     +++ LK
Sbjct: 76  KTHSFFFVKIRLLEDPKLKMKIDQAEKDFQKKIQAR--SQIFEAIKAKKNERFGIISELK 133

Query: 418 P 420
           P
Sbjct: 134 P 134


>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 92   KYYKNLGCLIKNAKRKKHLVEHEQE-EKQWDLLDNYMVAEDPFLGPGKNQKLTLFFLKKF 268
            K+  N+   +   KRK+ LVE+ QE EK     D+ +  ED F    K  +L   + K F
Sbjct: 2330 KHTSNVLSKVHEQKRKQLLVEYNQEMEKLKQKYDSLLQKEDSFYAQ-KEAELDTIYRKVF 2388


>04_04_0437 + 25193263-25194627
          Length = 454

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = +1

Query: 166 GEAMGSSRQLHGCRRSLFRTGQKPKTYPFFFKEIRSVKPDTMKLIVNWSGKEFLRETWTR 345
           G + GSS      R   F   +  K Y    K  R+V  D   +I +WSG + L  T+  
Sbjct: 62  GSSGGSSGGGGDLRPCDFENERLYKAYKVIQKFRRTVTCDPQNIISSWSGAD-LCSTYKG 120

Query: 346 FVEDSFPIVNDQEVMDV 396
           F  +  P + D+ +  V
Sbjct: 121 FFCERPPNITDRTIASV 137


>01_07_0242 +
           42234217-42234320,42234708-42235029,42235377-42235778,
           42235921-42236265,42236785-42236854,42237098-42237173,
           42237309-42237459
          Length = 489

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 490 HEVIRIV-EPSYVGMNNEYRISLAKKGGGCPIMNIHSE 600
           HE ++++ +P   G   EY   +A+  GG PI  I ++
Sbjct: 213 HETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGND 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,721,841
Number of Sequences: 37544
Number of extensions: 462332
Number of successful extensions: 1207
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)