Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1978
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 353 1e-98
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 200 2e-52
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 195 6e-51
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 145 6e-36
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 104 1e-23
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 101 8e-23
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 93 5e-20
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 54 1e-08
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.069
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.091
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.37
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.49
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.6
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 2.6
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.6
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.5
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 6.0
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 6.0
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 7.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 7.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 353 bits (868), Expect = 1e-98
Identities = 168/206 (81%), Positives = 176/206 (85%)
Frame = +1
Query: 58 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXKDSYVGDEAQ 237
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH KDSYVGDEAQ
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQ--KDSYVGDEAQ 59
Query: 238 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 417
SKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKM
Sbjct: 60 SKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKM 119
Query: 418 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIXXXX 597
TQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI
Sbjct: 120 TQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLD 179
Query: 598 XXXXXXXXXXMKILTERGYSFTTTAE 675
MKIL ERGY+F+TTAE
Sbjct: 180 LAGRDLTDYLMKILMERGYTFSTTAE 205
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 200 bits (488), Expect = 2e-52
Identities = 92/204 (45%), Positives = 132/204 (64%)
Frame = +1
Query: 64 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXKDSYVGDEAQSK 243
E A +V+DNG+G K G+A D+ PR FPSIVGRP KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 244 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 423
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 424 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIXXXXXX 603
MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H +
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVA 181
Query: 604 XXXXXXXXMKILTERGYSFTTTAE 675
+ +L +GY+F TA+
Sbjct: 182 GRDATRYLISLLLRKGYAFNRTAD 205
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 195 bits (475), Expect = 6e-51
Identities = 92/201 (45%), Positives = 130/201 (64%), Gaps = 1/201 (0%)
Frame = +1
Query: 76 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXKDSYVGDEAQSKRGIL 255
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H KD +VG EAQ+ RG+L
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQ--KDMFVGSEAQNLRGLL 69
Query: 256 TLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMF 432
++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +
Sbjct: 70 KIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFY 129
Query: 433 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIXXXXXXXXX 612
ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI
Sbjct: 130 ETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRD 189
Query: 613 XXXXXMKILTERGYSFTTTAE 675
L + G+ ++AE
Sbjct: 190 VTDYLQLQLRKSGHELVSSAE 210
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 145 bits (351), Expect = 6e-36
Identities = 78/199 (39%), Positives = 112/199 (56%), Gaps = 29/199 (14%)
Frame = +1
Query: 76 LVVDNGSGMCKAGFAGDDAPRAVFPSIVG--------------RPRHXXXXXXXXXXXK- 210
+++DNG+G K G+AG+DAP VFP+++ +P + K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKR 67
Query: 211 -----DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 372
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H L
Sbjct: 68 ATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFL 127
Query: 373 LTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSG 528
LTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSG
Sbjct: 128 LTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSG 187
Query: 529 DGVSHTVPIYEGYALPHAI 585
DGV+H +P+ EGY + +I
Sbjct: 188 DGVTHIIPVAEGYVIGSSI 206
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 104 bits (249), Expect = 1e-23
Identities = 59/171 (34%), Positives = 89/171 (52%)
Frame = +1
Query: 61 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXKDSYVGDEAQS 240
+EV+A+V+D GS + GF+G+D P+ V PS G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGE------FSDGRRLFGEEYI---YKS 59
Query: 241 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 420
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K
Sbjct: 60 NPG-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTL 118
Query: 421 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 573
+ MFE+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 119 ETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 101 bits (243), Expect = 8e-23
Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 2/165 (1%)
Frame = +1
Query: 76 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXKDSYVGDEAQSKRGIL 255
LV+DNGS +AG+ G+ P+ VF ++V R R D+ + ++S
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRKLSRTSTLVGNDTLIEVGSRS----- 81
Query: 256 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 435
+ P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 82 IARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFE 140
Query: 436 TFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEG 564
+N P++ I + S Y + + ++GIVL+ G+ SH +P+ G
Sbjct: 141 LYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNG 185
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 92.7 bits (220), Expect = 5e-20
Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 2/177 (1%)
Frame = +1
Query: 61 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXKDSYVGDEAQS 240
EE+ +LV+D GS + G+AG+++P + PS G ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG--------VRSDVTGRNKYVVDELQI 59
Query: 241 KRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 414
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R++
Sbjct: 60 HAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQ 119
Query: 415 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 585
+ + FE + PA Y+ QAV +A+ ++T +++D G + P+ +G + I
Sbjct: 120 IMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGI 176
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 54.4 bits (125), Expect = 1e-08
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +1
Query: 268 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 435
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 436 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 564
P +A + ++ LYA G G+V+D G + PI +G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.069
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 452 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 586
P T+P P T PV P S P+ P P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +2
Query: 449 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPTPS 586
PP +P P P VPP S P A + P P P+ K P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +2
Query: 449 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTKDTHSPTPS 586
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +2
Query: 449 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTKDTHSPTPS 586
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.091
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 328 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 471
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.37
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 428 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 586
C+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 28.7 bits (61), Expect = 0.85
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 428 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 586
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +2
Query: 440 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 586
ST P T S S P VPP S T + PT ST SP P+
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.49
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 473 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 577
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 473 PCSRCTRPVVPPVSCWTPATVSPTPCPST 559
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 489 RVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLNRSRPHRLPHEDPH 641
R RS HR+ G RR P+R HL R RH + + R R H
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHLSRHH---RHSTTNYHSKRDDRYERRREH 187
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 449 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 556
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 370 LLTEAPLNPKANREKMTQIMFETFN 444
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 103 TYRSHCLLPTRQLLRRTS*ISEI 35
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 25.8 bits (54), Expect = 6.0
Identities = 23/62 (37%), Positives = 28/62 (45%)
Frame = -3
Query: 264 FEGQDTSFALCLISYIRVLXPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIV 85
F G +F CLI++IR +SH D EHG II C T L G I+
Sbjct: 47 FAGLGIAFIYCLIAFIR---EMSHPSSR-------KDTMEHGL-PIILCST-LMLVGNIL 94
Query: 84 YY 79
YY
Sbjct: 95 YY 96
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 384 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 533
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +2
Query: 467 SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTKDTHSPTPSCVWT*PV 607
S+ S T P PP + T PA SP P + H PT S PV
Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPV 948
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,957
Number of Sequences: 5004
Number of extensions: 68332
Number of successful extensions: 251
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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