Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1977
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    30   0.29 
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    28   1.6  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    27   2.7  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   3.6  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    25   8.3  

>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
 Frame = +1

Query: 463 NERRDLDYDSRPRSRKRHQRW--GQVSVLTKIKNLHYDHITRRP*HSSTFAHA-FVVVPF 633
           +++ D D D +   ++ H  +  G VSV TK ++L YD   R P +S+      + + PF
Sbjct: 537 DQKVDSDKDGKLSDKQSHSAYVVGNVSVSTKKEHLSYDGRKRDPQYSNADGSCLWEIHPF 596

Query: 634 --SVSCTLTSFAPHVAYDAEVLG 696
                 T++  A  + Y  ++LG
Sbjct: 597 LNHFHPTVSLLAKSLVYGEKILG 619


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 337 VLQFYFYLSL*LTSGLFYI*YIWYNTKQITANSF 438
           + +FYF  +L  TS  F+I  I  N KQ T+ SF
Sbjct: 488 IYRFYFISALIFTSYSFWIPQIIQNVKQGTSRSF 521


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 463 SFFSFKNAESCSR*SV*YCTIYIKCRISLKLIIEIDKSKIA 341
           SF + ++ ++C    + YC + I+CR+  K I  + K  I+
Sbjct: 46  SFDTIRSKQNCRLKEI-YCRLKIRCRLKKKFIKSLSKKIIS 85


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +1

Query: 241 NYSPPNSNKYDVGTAVNPSLLDLGRTFANLLKVL---QFYFYLSL*LTSGL 384
           NYSP   + YD  T    S       F++L K+L    FYF L   +T+ L
Sbjct: 115 NYSPDIPDGYDTDTQGYDSYKYAAEPFSSLRKLLTNGSFYFSLDFDITTRL 165


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 215 KSVINYVNKIIPPQIQINTMSGRPSIHRCLT*VARSLIY 331
           ++VIN +N   PP   +  +SGR  I  C+  +  SLI+
Sbjct: 225 ETVIN-INSTYPPGDILVFLSGRKEIEYCIKKIEDSLIH 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,479
Number of Sequences: 5004
Number of extensions: 53626
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)