Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1977
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70310-3|CAA94365.1|  506|Caenorhabditis elegans Hypothetical pr...    31   0.63 
AF273830-1|AAG15179.1|  598|Caenorhabditis elegans nuclear recep...    30   1.5  
AC006671-1|AAF39914.2|  593|Caenorhabditis elegans Nuclear hormo...    30   1.5  
Z80221-1|CAB02309.1|  690|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AC024798-6|AAK29913.1|  356|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z70310-3|CAA94365.1|  506|Caenorhabditis elegans Hypothetical
           protein R11A8.3 protein.
          Length = 506

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +2

Query: 596 RPHLRTLLWSSPSPCRALSHLSPRT*RMTRKCSDT 700
           R HLR +LWS+P P    S L+PR      K S T
Sbjct: 82  RGHLRQVLWSNPGPYEDSSPLNPRIFYKLLKVSGT 116


>AF273830-1|AAG15179.1|  598|Caenorhabditis elegans nuclear receptor
           NHR-88 protein.
          Length = 598

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -3

Query: 316 CDLSQATMD*RPSRHRIYLNLGGNNFIYIVYD 221
           C  +++T++ +P+RH +  NL GNNF+  V D
Sbjct: 285 CLCNKSTINRQPARHLLDTNLVGNNFVGRVID 316


>AC006671-1|AAF39914.2|  593|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 88, isoform a protein.
          Length = 593

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -3

Query: 316 CDLSQATMD*RPSRHRIYLNLGGNNFIYIVYD 221
           C  +++T++ +P+RH +  NL GNNF+  V D
Sbjct: 280 CLCNKSTINRQPARHLLDTNLVGNNFVGRVID 311


>Z80221-1|CAB02309.1|  690|Caenorhabditis elegans Hypothetical
           protein ZC247.2 protein.
          Length = 690

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 413 LNRLPRTAFCVFK*EERMSDVISITTHGR--GPANDIRDGDK*ASLQKSKT 559
           LN LP+  F      E M  VI+  +     GP+ND  DG   + L+K  T
Sbjct: 260 LNDLPKPEFSTIASSESMKTVINGKSEREEAGPSNDSSDGGSASELRKKLT 310


>AC024798-6|AAK29913.1|  356|Caenorhabditis elegans Hypothetical
           protein Y48G9A.11 protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
 Frame = +3

Query: 504 PQTTSEMGTSKRPYKNQKLALRSHNAPALTFVHICARFCGRPLLRVVHSHIFR--PARSV 677
           P      G   RP K  K A  +H +   TF  I  R C   L    H H+    P  ++
Sbjct: 216 PTDKEPRGARNRPTKKLKRACTAHISVRETFGQIHVRAC---LFHCGHEHLVNNLPLSTI 272

Query: 678 *RGSARTLLI 707
            R    TLLI
Sbjct: 273 VRKEIATLLI 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,214,292
Number of Sequences: 27780
Number of extensions: 297906
Number of successful extensions: 633
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)