Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1973
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 193 2e-50
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 111 9e-26
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 107 2e-24
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 105 5e-24
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 67 3e-12
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 66 6e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 59 7e-10
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 42 1e-04
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 38 0.001
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 33 0.039
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 29 0.84
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 29 0.84
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 3.4
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.5
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 26 5.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 193 bits (471), Expect = 2e-50
Identities = 88/94 (93%), Positives = 90/94 (95%)
Frame = +2
Query: 257 SYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN 436
SYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLN
Sbjct: 52 SYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLN 111
Query: 437 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 538
PK+NREKMTQI+FETFN PA YVAIQAVLSLYAS
Sbjct: 112 PKSNREKMTQIIFETFNAPAFYVAIQAVLSLYAS 145
Score = 102 bits (244), Expect = 6e-23
Identities = 47/51 (92%), Positives = 49/51 (96%)
Frame = +1
Query: 538 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILPTR 690
GRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL R
Sbjct: 146 GRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMER 196
Score = 76.6 bits (180), Expect = 3e-15
Identities = 33/39 (84%), Positives = 36/39 (92%)
Frame = +3
Query: 102 DEEVAALVVDNGSGMCKAGFXXXDAPRAVFPSIVGRPRH 218
+EE+AALV+DNGSGMCKAGF DAPRAVFPSIVGRPRH
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 40
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 111 bits (267), Expect = 9e-26
Identities = 47/91 (51%), Positives = 70/91 (76%)
Frame = +2
Query: 263 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 442
VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP
Sbjct: 54 VGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPV 113
Query: 443 ANREKMTQIMFETFNTPAMYVAIQAVLSLYA 535
ANREKM + MFE + +YVAIQAVLSLYA
Sbjct: 114 ANREKMCETMFERYGFGGVYVAIQAVLSLYA 144
Score = 64.5 bits (150), Expect = 1e-11
Identities = 27/48 (56%), Positives = 37/48 (77%)
Frame = +1
Query: 538 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 681
G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L
Sbjct: 146 GLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLL 193
Score = 43.6 bits (98), Expect = 3e-05
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +3
Query: 108 EVAALVVDNGSGMCKAGFXXXDAPRAVFPSIVGRP 212
E A +V+DNG+G K G+ + PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 107 bits (256), Expect = 2e-24
Identities = 48/100 (48%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Frame = +2
Query: 242 TEGVKSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 418
TE + ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LL
Sbjct: 69 TEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLL 128
Query: 419 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 538
TE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS
Sbjct: 129 TEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAAS 168
Score = 54.8 bits (126), Expect = 1e-08
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = +1
Query: 547 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILPTR 690
TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L R
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
Score = 35.1 bits (77), Expect = 0.010
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 120 LVVDNGSGMCKAGFXXXDAPRAVFPSIV 203
+++DNG+G K G+ DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 105 bits (253), Expect = 5e-24
Identities = 47/94 (50%), Positives = 67/94 (71%), Gaps = 1/94 (1%)
Frame = +2
Query: 260 YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 436
+VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL
Sbjct: 57 FVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLA 116
Query: 437 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 538
N+EK+ + +ET N PA+ ++Q VL+LYAS
Sbjct: 117 NIRNKEKIAEYFYETLNVPALSFSLQPVLALYAS 150
Score = 65.7 bits (153), Expect = 6e-12
Identities = 26/43 (60%), Positives = 38/43 (88%)
Frame = +1
Query: 541 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 669
RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL
Sbjct: 152 RTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYL 194
Score = 44.0 bits (99), Expect = 2e-05
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +3
Query: 120 LVVDNGSGMCKAGFXXXDAPRAVFPSIVGRPRH 218
+ +DNGSG KAGF D P+ +FP+ VGR +H
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKH 44
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 66.9 bits (156), Expect = 3e-12
Identities = 31/81 (38%), Positives = 45/81 (55%)
Frame = +2
Query: 296 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 475
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 476 ETFNTPAMYVAIQAVLSLYAS 538
E+ PA Y+A Q + +AS
Sbjct: 123 ESLRCPATYLAKQETCAAFAS 143
Score = 35.5 bits (78), Expect = 0.007
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 105 EEVAALVVDNGSGMCKAGFXXXDAPRAVFPSIVG 206
+EV+A+V+D GS + GF D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 65.7 bits (153), Expect = 6e-12
Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Frame = +2
Query: 263 VGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 439
VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +TE NP
Sbjct: 69 VGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANP 127
Query: 440 KANREKMTQIMFETFNTPAMYVAIQAVLSLYASVVPPVS 556
R MT+++FE +N P++ I + S Y + P S
Sbjct: 128 TYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSS 166
Score = 34.7 bits (76), Expect = 0.013
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 544 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 678
++GIVL+ G+ SH +P+ G + R+ G + YL+K+
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKL 209
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 120 LVVDNGSGMCKAGFXXXDAPRAVFPSIVGRPR 215
LV+DNGS +AG+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 58.8 bits (136), Expect = 7e-10
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Frame = +2
Query: 215 PSGRDGRYGTEGVKSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 388
PS R G YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 389 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 538
V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFAN 146
Score = 30.7 bits (66), Expect = 0.21
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 105 EEVAALVVDNGSGMCKAGFXXXDAPRAVFPSIVG 206
EE+ +LV+D GS + G+ ++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +2
Query: 311 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 478
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 479 TFNTPAMYVAIQAVLSLYA 535
P +A + ++ LYA
Sbjct: 172 ECQVPGFTIAYEPLMGLYA 190
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 37.9 bits (84), Expect = 0.001
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +1
Query: 553 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILPTR 690
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL +++ R
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYR 204
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 33.1 bits (72), Expect = 0.039
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Frame = +2
Query: 245 EGVKSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWH-HTFYNELRVAPEEHPVLLT 421
E V YV D++ + ++ P + D + + + +Y L E+HP+LLT
Sbjct: 1356 EAVFLYVHDQSYDNAAAVMMEQPEAFDHQSFKDIIVHVANLELYYRALNFYLEQHPMLLT 1415
Query: 422 E--APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASVV 544
+ A L P+ + ++ +I ++ NTP + + A+ L V
Sbjct: 1416 DLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQHLNIQAV 1458
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.7 bits (61), Expect = 0.84
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 480 HST-RPPCTSPSKPCSRCTR-RSYHRYRAGLRRRCLPHRAHLRRIRTSPRHSASGLSRSR 653
HST R TSP+ R + R+ +R G RR P+R HL R RHS + R
Sbjct: 121 HSTSRSRSTSPANRHRRKEKERTRSNHRHGSHRRHEPYRTHLSR---HHRHSTTNYHSKR 177
Query: 654 PHR 662
R
Sbjct: 178 DDR 180
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.84
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 538 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 681
G + V+D G + + EG +P++ ++++ G D+T MK+L
Sbjct: 289 GMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLL 336
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 545 PPVSCWTPATVSPTPCPSTKDTHFP 619
PPV+C TP P C K H P
Sbjct: 631 PPVACGTPIPDCPYLCVLPKSCHHP 655
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 413 LLTEAPLNPKANREKMTQIMFETFN 487
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 474 SKHSTRPPCTSPSKPCSRCTRRSYHRYRAGLRRRCLPHRAHLRRIRTS 617
+++ + PP T P+ P S R S +++ +RR L + +R+S
Sbjct: 692 ARNFSSPPFTRPASPSSSKFRFSSSSFQSTIRRNSLTSPYSVPELRSS 739
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,950
Number of Sequences: 5004
Number of extensions: 68642
Number of successful extensions: 194
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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