Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1972
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   2.4  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    26   4.2  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    26   5.6  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   9.7  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    25   9.7  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 477  TNELLRNAESKTLNPRGR*MFPQSKSITYEFNGIQNLY*IVKH 349
            TNE ++ ++SK    + R   PQS+S T E N   NL  + +H
Sbjct: 1408 TNEDIQRSDSKLREDQSRDRTPQSRSFTNENN--DNLRSVSRH 1448


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +3

Query: 255 NNIGSGMSA--WCTYKWR*MYLFGSLG 329
           +N G+G S   W T+K+R M L GS+G
Sbjct: 653 SNYGTGDSRCFWITHKYRPMLLVGSVG 679


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 247 GKKIISDRV*VPGVPTNGVKCIYLDPLGRIAGCSVLHNLI 366
           GK     +V  PG+   G  C +   L  +  C  LH++I
Sbjct: 197 GKSSKKYKVISPGLKNLGATCFFNSTLQVLCACEALHDVI 236


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
 Frame = +3

Query: 438 LKFCFPHYVIVRLFWIIECF-----EVVCLKLL 521
           +K C P  V++ L+++++C       V CL+L+
Sbjct: 6   MKICRPSLVLIYLWYLVDCTSFSMNSVTCLRLM 38


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 222 SAVPMYIWREKNNIGSGMSAWCTYKWR*MYLFGSLGPN 335
           S V MY+  E N +      + TY W+ MY   S+ P+
Sbjct: 509 SKVGMYVPLESNTVYQHSPTYDTYGWQSMYPSYSVYPS 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,069
Number of Sequences: 5004
Number of extensions: 58052
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)