Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1972
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00052-13|AAW88393.1|  608|Caenorhabditis elegans Hypothetical p...    29   2.9  
U00052-12|AAK21428.2|  631|Caenorhabditis elegans Hypothetical p...    29   2.9  
AF100672-3|AAP40517.1|  181|Caenorhabditis elegans Groundhog (he...    29   3.9  
Z66521-16|CAA91396.2|  793|Caenorhabditis elegans Hypothetical p...    27   9.0  
AF188715-1|AAF05590.1|  793|Caenorhabditis elegans alanyl-tRNA s...    27   9.0  

>U00052-13|AAW88393.1|  608|Caenorhabditis elegans Hypothetical
           protein K02F3.12b protein.
          Length = 608

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -2

Query: 531 FVIKEVLDKQLRNTQLSKTNELLRNAESKT--LNPRGR*MFPQSKSITYEFNGIQNLY*I 358
           FVI   L K + N    ++    R+ +  T  L  R   +F QS  +  E  GIQNLY +
Sbjct: 380 FVIHHSLPKSIEN-YYQESGRAGRDGQPATCILYYRLADIFKQSSMVQQERTGIQNLYNM 438

Query: 357 VKHRTTCNSAQGIQI 313
           V++    ++ + +++
Sbjct: 439 VRYAADSSTCRRVKL 453


>U00052-12|AAK21428.2|  631|Caenorhabditis elegans Hypothetical
           protein K02F3.12a protein.
          Length = 631

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -2

Query: 531 FVIKEVLDKQLRNTQLSKTNELLRNAESKT--LNPRGR*MFPQSKSITYEFNGIQNLY*I 358
           FVI   L K + N    ++    R+ +  T  L  R   +F QS  +  E  GIQNLY +
Sbjct: 403 FVIHHSLPKSIEN-YYQESGRAGRDGQPATCILYYRLADIFKQSSMVQQERTGIQNLYNM 461

Query: 357 VKHRTTCNSAQGIQI 313
           V++    ++ + +++
Sbjct: 462 VRYAADSSTCRRVKL 476


>AF100672-3|AAP40517.1|  181|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 3 protein.
          Length = 181

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -2

Query: 300 AICRYTRHSYPIRYYFFPAKYT*VPLNTNTEAYNHYFSERD 178
           ++C++  +SY +  Y  PAKY    +N++ E Y + F+  D
Sbjct: 101 SLCKFQSNSYTLAIYETPAKY---DINSSREKYFNKFALND 138


>Z66521-16|CAA91396.2|  793|Caenorhabditis elegans Hypothetical
           protein W02B12.6a protein.
          Length = 793

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 416 NIQRPRGFKVLLSALRNSSFVLDN*VFRSCLSKTSLITN*EY 541
           +I    GF+ LLS ++N +   D  VF   L KTS +   +Y
Sbjct: 247 HIDTGMGFERLLSVVQNKTSNFDTDVFTPILEKTSELAKKQY 288


>AF188715-1|AAF05590.1|  793|Caenorhabditis elegans alanyl-tRNA
           synthetase protein.
          Length = 793

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 416 NIQRPRGFKVLLSALRNSSFVLDN*VFRSCLSKTSLITN*EY 541
           +I    GF+ LLS ++N +   D  VF   L KTS +   +Y
Sbjct: 247 HIDTGMGFERLLSVVQNKTSNFDTDVFTPILEKTSELAKKQY 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,767,280
Number of Sequences: 27780
Number of extensions: 313596
Number of successful extensions: 591
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)