Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1972
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.5  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   4.5  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   6.0  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   6.0  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   6.0  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 318 QINTFNAICRYTRHSYPIRYYFFPAKY 238
           +I   N I +Y+R  +P+ +  F A Y
Sbjct: 457 KIKDVNIIDKYSRIIFPVSFMLFNAIY 483


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 296 FVGTPGTHTRSDIIFFPPNIHRYR 225
           ++G P    R    F PPN++R+R
Sbjct: 369 YIGPPTPFPR----FIPPNVYRFR 388


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -2

Query: 345 TTCNSAQGIQINTFNAICRYTRHSYPIRYYFFPAKY 238
           T CN     Q +T N +  Y +   P  +    AKY
Sbjct: 70  TGCNKCNEKQKHTANKVVNYLKTKRPKDWERLSAKY 105


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/34 (23%), Positives = 14/34 (41%)
 Frame = -2

Query: 339 CNSAQGIQINTFNAICRYTRHSYPIRYYFFPAKY 238
           CN     QI   N +  + + +YP  +     +Y
Sbjct: 65  CNRCTSRQIGIANTLIPFMQQNYPYEWQLILRRY 98


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -2

Query: 345 TTCNSAQGIQINTFNAICRYTRHSYPIRYYFFPAKY 238
           T CN     Q +T N +  Y +   P  +    AKY
Sbjct: 70  TGCNKCNEKQKHTANKVVNYLKTKRPKDWERLSAKY 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,619
Number of Sequences: 438
Number of extensions: 4794
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)