Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1971
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.2  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    27   3.2  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   5.6  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    26   5.6  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   7.4  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       25   7.4  

>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 221 LLKPESINTVQPRKKK 268
           ++KP+SI TV+P KKK
Sbjct: 453 VVKPDSIKTVKPEKKK 468


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 253 LYRINRFRFKKYSRLVVVKCNSNLIIQGGRGTDLPPL-PADYLYRNSAPSCIDN 95
           +++I+  R  K S+LV V C  + +IQ   G++   L P   +Y N   S I N
Sbjct: 163 VHKISLTRSGKPSQLVTVSCRHSSVIQKSYGSEKRYLCPPPMVYINGNYSSIFN 216


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 509 RQPNSILKAQLTTIRVKNFTLFSNAINPRSI*LFIKIP 622
           ++P+  L+++L  I V    L+SN    +++  F K+P
Sbjct: 864 KEPHLFLRSRLNEITVYKAFLYSNTDKHKNLLAFAKVP 901


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 335 KHKFNLKYISTASFGWLQ 388
           KHKF LK IS  +  WL+
Sbjct: 341 KHKFKLKTISPETLNWLK 358


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +2

Query: 410 GRPQNVGVNDPCWWVGSQVYLLRSPHAVWL*IPRQPNSILKAQLTTIRVKNFTLFSNAIN 589
           GR  ++   +P WW       L+    +W  +   P  +L A    I + +F   S+ I+
Sbjct: 257 GRGPDIYGTEP-WWYYFANLSLQHNIVLWFAMACGPLVLLAAFTNWINLDSFLDLSSVIS 315

Query: 590 PRSI*LFIKI 619
           P  I LFI I
Sbjct: 316 PFYIWLFIFI 325


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 208 VVVKCNSNLIIQGGRGTDLPPLPADYLYR 122
           + V    NL++Q   GT+L PL  D +Y+
Sbjct: 466 IAVPKKYNLVLQPQSGTNLSPLQKDGIYQ 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,261
Number of Sequences: 5004
Number of extensions: 56701
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)