Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1971
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0064 - 26105845-26106198                                         31   0.62 
06_03_1513 - 30692833-30693258,30693365-30693541,30693807-306938...    29   2.5  
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761...    29   3.3  
04_04_0048 + 22351788-22352177,22353175-22353711                       28   5.8  

>01_06_0064 - 26105845-26106198
          Length = 117

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 85  SIEDYRCKKVQSSYRDSLQVGE 150
           S+EDY CKKV+  Y +  +VGE
Sbjct: 66  SMEDYTCKKVEKGYGEKRKVGE 87


>06_03_1513 -
           30692833-30693258,30693365-30693541,30693807-30693818,
           30693988-30694033,30695070-30695365
          Length = 318

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 151 PPLPADYLYRNSAPSCIDNPQC*GS*LLHNFPF 53
           PP P  Y +R  APS    P+  GS  LH+ PF
Sbjct: 39  PPSPEPYAFRPDAPSPFGMPEANGS--LHDDPF 69


>05_03_0619 +
           16274255-16274396,16274775-16274848,16275111-16276139,
           16276484-16276702,16277228-16277250,16277482-16277606,
           16279480-16279670,16280202-16280360,16281359-16281598
          Length = 733

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 559 KLHLVFQCNQSSLNLTL 609
           KLH++F+CNQ   NL L
Sbjct: 523 KLHIIFECNQGKWNLVL 539


>04_04_0048 + 22351788-22352177,22353175-22353711
          Length = 308

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 11  ARTAQKGGNLSPGGKRKVMKESRTSALRIIDARRCRVPIEIV 136
           AR A  GG+   GG+RK + +   S+L    A     PI+ V
Sbjct: 3   ARAAAGGGDGDGGGRRKTLAKVSLSSLSAAAAEAATFPIDAV 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,663,594
Number of Sequences: 37544
Number of extensions: 354575
Number of successful extensions: 700
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)