Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1971
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106577-16|AAC78188.1|  369|Caenorhabditis elegans Hypothetical...    29   3.9  
AF043697-4|AAO38636.1|  431|Caenorhabditis elegans Hypothetical ...    28   6.8  
AF043697-3|AAB97558.1|  548|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>AF106577-16|AAC78188.1|  369|Caenorhabditis elegans Hypothetical
           protein F46F5.10 protein.
          Length = 369

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/77 (28%), Positives = 30/77 (38%)
 Frame = -2

Query: 316 KNYTINK*NS*RYTNKFFFSRLYRINRFRFKKYSRLVVVKCNSNLIIQGGRGTDLPPLPA 137
           KN  I K N  +Y N      +  +  +RFK      V+   SN+         L P P 
Sbjct: 167 KNVIIRKFNYAKYPNY-----VRNLKEYRFKALILAEVISEYSNVWWLDAHNRWLQPKPL 221

Query: 136 DYLYRNSAPSCIDNPQC 86
            Y+Y   A  C +N  C
Sbjct: 222 SYMYEEMA-QCYNNDDC 237


>AF043697-4|AAO38636.1|  431|Caenorhabditis elegans Hypothetical
           protein F56C11.6b protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 314 FMTTTSDKHKFNLK-YISTASFGWLQLDNQTTKGRPQNVGVNDPCWWVGSQVYLLRSPHA 490
           F TT  +  + NL  +  TA+  W+Q + Q+ +G P NV +        S   L  SPH+
Sbjct: 45  FFTTGDEVCRGNLGLWDQTAALEWVQENIQSFRGDPDNVTIFGQSAGGASVDLLCLSPHS 104


>AF043697-3|AAB97558.1|  548|Caenorhabditis elegans Hypothetical
           protein F56C11.6a protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 314 FMTTTSDKHKFNLK-YISTASFGWLQLDNQTTKGRPQNVGVNDPCWWVGSQVYLLRSPHA 490
           F TT  +  + NL  +  TA+  W+Q + Q+ +G P NV +        S   L  SPH+
Sbjct: 162 FFTTGDEVCRGNLGLWDQTAALEWVQENIQSFRGDPDNVTIFGQSAGGASVDLLCLSPHS 221


>Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical
           protein C10C6.6 protein.
          Length = 1178

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 259 SRLYRINRFRFKKYSRLVVVKCNSNLIIQGGRGTDLPPLPADYL 128
           ++ Y IN  R KK+ ++ + +  +  I+  GRG +   +P D L
Sbjct: 245 NKTYMINVLRGKKWQKIKIEELVAGDIVSIGRGAEEECVPCDLL 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,284,648
Number of Sequences: 27780
Number of extensions: 317040
Number of successful extensions: 682
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)