Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1968
         (622 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8L394 Cluster: CylI; n=2; Enterococcus faecalis|Rep: C...    36   1.0  
UniRef50_Q22YD2 Cluster: Two component regulator propeller famil...    32   9.6  

>UniRef50_Q8L394 Cluster: CylI; n=2; Enterococcus faecalis|Rep: CylI
           - Enterococcus faecalis (Streptococcus faecalis)
          Length = 341

 Score = 35.5 bits (78), Expect = 1.0
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -1

Query: 475 TILFESKIIGLSYYSLLLQYFVFSFSHLRFNDSLYRMKPTYV*FGYADDKFEP--FIRLN 302
           T++FE  ++  +Y+SLLL  FV    HL F     +++P  + FG+    +E    +RLN
Sbjct: 17  TLVFELNLVSTAYFSLLLSIFVHELGHLVFG-LFNKVRPESLIFGFIKLSWEKQFKVRLN 75


>UniRef50_Q22YD2 Cluster: Two component regulator propeller family
            protein; n=10; Tetrahymena thermophila SB210|Rep: Two
            component regulator propeller family protein -
            Tetrahymena thermophila SB210
          Length = 5482

 Score = 32.3 bits (70), Expect = 9.6
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +2

Query: 296  GTI*SDKWLKFVVRITKSNISWLHSVQT-IIKT*MTKTE-YKILEQ*RII**PDNFGLEE 469
            G    + W K  V+IT +N    + V     KT + + E +K+L+   II  P N  LE 
Sbjct: 3269 GNYLQNDWYKQYVQITATNDLDQYGVHVPFSKTTLIEDEIFKVLKDLEII--PKNLDLEN 3326

Query: 470  YRLSYISTL 496
            Y+LSY+ ++
Sbjct: 3327 YQLSYLQSI 3335


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 507,587,063
Number of Sequences: 1657284
Number of extensions: 8463690
Number of successful extensions: 17249
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17233
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)