Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1966
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376...    28   6.7  
12_01_0090 + 717524-719080                                             27   8.8  
05_06_0166 + 26093618-26095381,26095820-26096039,26096345-260966...    27   8.8  

>02_01_0521 +
           3768072-3768239,3768280-3768337,3769197-3769659,
           3769736-3769990,3770763-3770934,3772260-3772910,
           3773659-3774045,3774123-3774155,3774239-3774307,
           3774388-3774463,3775135-3775223,3775442-3775615,
           3775693-3775821
          Length = 907

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 340 QTCPEFINHKNMIKIY*FGSHKSIC 414
           Q+C   +NHK + K Y  G ++S+C
Sbjct: 165 QSCSLKVNHKRVAKAYFIGYNRSLC 189


>12_01_0090 + 717524-719080
          Length = 518

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 453 TSTGYRLQEDADVADGLMGSELIDFY 376
           T+    LQ    VADGL+G+ LID Y
Sbjct: 295 TNIHRNLQNKGIVADGLVGNALIDMY 320


>05_06_0166 +
           26093618-26095381,26095820-26096039,26096345-26096674,
           26097481-26098029,26098366-26098426,26099737-26099824,
           26100240-26100299
          Length = 1023

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 579 LVDNAFAFSVLKKKIY*V*TGTMYIFYSPSGT 484
           LV  A + ++LK+KI     G +Y+FY P GT
Sbjct: 373 LVVQALSNAILKRKI-----GLVYVFYGPHGT 399


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,570,649
Number of Sequences: 37544
Number of extensions: 244559
Number of successful extensions: 380
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)