Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1966
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.3  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   3.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   7.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.4  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 91  LPASTCIK*ILLDPYMY 41
           +PA TC     LDPY+Y
Sbjct: 312 IPACTCKAVACLDPYVY 328


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
 Frame = -1

Query: 522 TGTMYIFYSPSGTPSWRITEHLL----TSTGYRLQEDA-DVADGLMGSEL 388
           TG   + Y    + SWRIT +L         + ++ D  D+ DG++G  L
Sbjct: 204 TGFALLVYDFRNSRSWRITNNLFYPYPPYGTFNIKGDTFDLMDGILGLAL 253


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 1   HENSSYKNYVIRIY 42
           H N++YKNY  ++Y
Sbjct: 324 HNNNNYKNYNKKLY 337


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 383 SINSDPISPSATSASSCNLYPVLV 454
           S+  DP++ S  +A+    YP L+
Sbjct: 461 SVQVDPMAASVVAAALTGTYPTLL 484


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 288 LKPEFYFNWSQF 253
           L PE Y+ WS F
Sbjct: 107 LPPEIYYIWSHF 118


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 318 NSVNQLRPNVSRVYQ 362
           NS++QLR  VS +Y+
Sbjct: 95  NSISQLRKEVSLLYR 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,866
Number of Sequences: 438
Number of extensions: 3657
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)