Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1965
         (648 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D55A17 Cluster: PREDICTED: similar to CCR4-NOT t...    69   1e-10
UniRef50_A5YKK6 Cluster: CNOT1; n=47; Coelomata|Rep: CNOT1 - Hom...    64   4e-09
UniRef50_A7RRG5 Cluster: Predicted protein; n=2; Eumetazoa|Rep: ...    48   1e-04
UniRef50_A1Z7V7 Cluster: CG1874-PA; n=2; Sophophora|Rep: CG1874-...    47   3e-04
UniRef50_Q552A9 Cluster: CCR4-Not complex component, Not1; n=3; ...    46   8e-04
UniRef50_Q20497 Cluster: Putative uncharacterized protein dpy-22...    38   0.28 
UniRef50_Q623D7 Cluster: Putative uncharacterized protein CBG019...    37   0.48 
UniRef50_Q11U36 Cluster: Probable 2-hydroxy-6-ketonona-2,4-diene...    33   6.0  

>UniRef50_UPI0000D55A17 Cluster: PREDICTED: similar to CCR4-NOT
           transcription complex, subunit 1 isoform a; n=1;
           Tribolium castaneum|Rep: PREDICTED: similar to CCR4-NOT
           transcription complex, subunit 1 isoform a - Tribolium
           castaneum
          Length = 2347

 Score = 68.5 bits (160), Expect = 1e-10
 Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
 Frame = +3

Query: 243 MNLDSLTLSLSHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLTEAARIAW 422
           MNLDSL+ +LS I YLV +L KKN+KQ   EL+++V+++GLEA+  +L+CL +       
Sbjct: 1   MNLDSLSFTLSQISYLVASLTKKNYKQVVAELSKLVTLHGLEADRHLLQCLFSSV----- 55

Query: 423 DGDRTTSAAT-NSIHXXXXXXXXXXXXNHPAKSTVVCRAVDHSTPL-CNKAIKAYKMHLL 596
           D   +TS  T  S              N P+  T VC   D+  PL  NKA K +     
Sbjct: 56  DFSESTSKITAPSPQNQALLEQCSNLLNKPSLLTSVCYITDN--PLSTNKAFK-FGPQFF 112

Query: 597 NRLSRTV*RLTTAED 641
            +LS+ + RL+  ++
Sbjct: 113 QQLSKCL-RLSAVQE 126


>UniRef50_A5YKK6 Cluster: CNOT1; n=47; Coelomata|Rep: CNOT1 - Homo
           sapiens (Human)
          Length = 2371

 Score = 63.7 bits (148), Expect = 4e-09
 Identities = 32/67 (47%), Positives = 46/67 (68%)
 Frame = +3

Query: 243 MNLDSLTLSLSHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLTEAARIAW 422
           MNLDSL+L+LS I YLV NL KKN++ + QE+  IV+ +G EA+  +LRCL    + + +
Sbjct: 1   MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLF---SHVDF 57

Query: 423 DGDRTTS 443
            GD  +S
Sbjct: 58  SGDGKSS 64


>UniRef50_A7RRG5 Cluster: Predicted protein; n=2; Eumetazoa|Rep:
           Predicted protein - Nematostella vectensis
          Length = 2363

 Score = 48.4 bits (110), Expect = 1e-04
 Identities = 21/52 (40%), Positives = 34/52 (65%)
 Frame = +3

Query: 249 LDSLTLSLSHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLTE 404
           +D+L+LSL  I + V  L+KKNFK T  E+++++  +G EAE    R L ++
Sbjct: 5   VDALSLSLKQISFAVTELSKKNFKSTVAEIHELIEKHGFEAECHFFRVLFSQ 56


>UniRef50_A1Z7V7 Cluster: CG1874-PA; n=2; Sophophora|Rep: CG1874-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 301

 Score = 47.2 bits (107), Expect = 3e-04
 Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
 Frame = +3

Query: 243 MNLDS-LTLSLSHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLT 401
           MN++S L    +HI  LV ++NK+NF ++S+++NQ V  +GLEA+   LR L +
Sbjct: 1   MNVESQLKTPPTHIRNLVKHVNKRNFNESSEQINQFVKEHGLEADRSSLRHLFS 54


>UniRef50_Q552A9 Cluster: CCR4-Not complex component, Not1; n=3;
           Dictyostelium discoideum|Rep: CCR4-Not complex
           component, Not1 - Dictyostelium discoideum AX4
          Length = 2526

 Score = 46.0 bits (104), Expect = 8e-04
 Identities = 24/62 (38%), Positives = 35/62 (56%)
 Frame = +3

Query: 273 SHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLTEAARIAWDGDRTTSAAT 452
           + I  L+ NL KK++K  S EL+QI++ YG +AE  + RCL+        +   TTS  T
Sbjct: 98  TQIKNLISNLTKKSYKSNSSELSQIINQYGSQAEIYIFRCLVDSIDFKNTNTPITTSPTT 157

Query: 453 NS 458
            S
Sbjct: 158 TS 159


>UniRef50_Q20497 Cluster: Putative uncharacterized protein dpy-22;
            n=1; Caenorhabditis elegans|Rep: Putative uncharacterized
            protein dpy-22 - Caenorhabditis elegans
          Length = 3498

 Score = 37.5 bits (83), Expect = 0.28
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
 Frame = +2

Query: 131  LSFRQKTTKE--HKFVVENHKKSRKLQTCLKLSFLH*WNYEPGLFNVELIAYTLS----R 292
            ++ R++T +E  HK + E HK S+K      LSF++ WN+   LF++ L+   +S     
Sbjct: 1734 MALRRRTERENVHK-LFEAHKISKKATVDKVLSFMNLWNFRATLFDLMLMIKEISPDGNS 1792

Query: 293  RKFKQEKFQADE--SRIESDCQCLWLGSRESSFKM 391
            R  +Q    AD   S I   C+ ++L + ++  KM
Sbjct: 1793 RHAQQGAIAADALMSEIGKCCRDMFLSAYKTKIKM 1827


>UniRef50_Q623D7 Cluster: Putative uncharacterized protein CBG01900;
            n=1; Caenorhabditis briggsae|Rep: Putative
            uncharacterized protein CBG01900 - Caenorhabditis
            briggsae
          Length = 3941

 Score = 36.7 bits (81), Expect = 0.48
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
 Frame = +2

Query: 101  IKLVMLGLGLL--SFRQKTTKEHKF-VVENHKKSRKLQTCLKLSFLH*WNYEPGLFNVEL 271
            +K   LG  LL  S R+KT + +   + E HK S+K      LSF++ WN+   LF++ L
Sbjct: 2026 LKTNCLGQQLLRISLRRKTERSNVHSLFEAHKISKKATVDKVLSFMNLWNFRATLFDLML 2085

Query: 272  IAYTLS----RRKFKQEKFQADE--SRIESDCQCLWLGSRESSFKM 391
            +   +S     R  +Q    AD   S I   C+ ++L + ++  KM
Sbjct: 2086 MIKEISPDGNTRHAQQGAIAADALMSEIGKCCRDMFLAAYKADAKM 2131


>UniRef50_Q11U36 Cluster: Probable
           2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; n=1;
           Cytophaga hutchinsonii ATCC 33406|Rep: Probable
           2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase -
           Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
          Length = 263

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 234 NGTMNLDSLTLSLSHIHYLVVNLNKKNFKQTSQEL-NQIVSVYGLEAENQVLRCLLTEAA 410
           +GTM  D L   ++++H LV  L  + F      L  Q+  +Y +    +V+R +LT +A
Sbjct: 60  DGTMQKDGLDGLVTYLHELVTELKIERFNLVGNSLGGQVAILYSVAYPEKVIRLVLTGSA 119


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,324,289
Number of Sequences: 1657284
Number of extensions: 10476619
Number of successful extensions: 24402
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24397
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)