Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1965
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    29   0.76 
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   9.4  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    25   9.4  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    25   9.4  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    25   9.4  

>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -2

Query: 590 VHFVGFNSFVTERC*MINSPANNC*FSWMIEQACQLLSKKGGVDAISSC 444
           ++F  F ++V + C     P N   F  M    C++   + G  AI +C
Sbjct: 272 LYFDQFGNYVAQCCLRFKYPKNTFLFEVMARHCCEIGQSRFGARAIRAC 320


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 479 SKKGGVDAISSCRSCTVSVPSYPCRFSEKTS 387
           SKK  VD +SS R C V   +  C F E  S
Sbjct: 465 SKKHSVD-LSSLRMCMVDCLNVDCEFQEIVS 494


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 280 ICDKLNVKESRFIVPLMQKRKLQT 209
           +CD  N +ESR+  P ++ R ++T
Sbjct: 117 LCDDGNFRESRWFTPWLRPRVVET 140


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 436 QLLQLLIASTPPFLDNSWQACSIIQLNQQLFAGLLIIQHRSVT 564
           +L+   IAST PFL + +     + LN  + +  L +    VT
Sbjct: 486 ELIHSPIASTNPFLADQFARSETVDLNAHICSPALSVSDDGVT 528


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 242 YEPGLFNVELIAYTLSRRKFKQEKFQADESRIESDCQCL 358
           +  G+F+ +L    L R+K  Q  F   +  +   CQCL
Sbjct: 220 FHSGVFSYKLFRAILIRKKIGQFPFGPMQCILVISCQCL 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,481,065
Number of Sequences: 5004
Number of extensions: 47595
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)