Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1965
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0328 + 24441747-24442073,24442205-24442327,24442947-244430...    30   1.8  
02_05_1110 - 34182943-34182963,34183122-34183301,34184201-341845...    29   4.2  
01_04_0110 - 16118497-16118637,16119868-16120008,16121154-161212...    28   5.6  

>04_04_0328 +
           24441747-24442073,24442205-24442327,24442947-24443012,
           24443155-24443223,24443263-24443307
          Length = 209

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 52  IAEWGDNNYVVFIKVNNKIGDVGLRFIIISSENYQRTQVRRRKS*KIEK 198
           I  W D+N +VF     K G  G   II +  NY+   V  R+   +EK
Sbjct: 73  IGSWEDSNSIVFSTSTGKSGAHGNDDIIATLSNYESQLVAPREMAGVEK 121


>02_05_1110 -
           34182943-34182963,34183122-34183301,34184201-34184546,
           34184794-34184846
          Length = 199

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 512 SWMIEQACQLLSKKGGVDAISSCRSCTVSVPSY 414
           SWM E  C ++  +G   A   C S   S PSY
Sbjct: 7   SWMKEHMCSIIINQGWAVAPLLCSSLACSEPSY 39


>01_04_0110 -
           16118497-16118637,16119868-16120008,16121154-16121256,
           16122541-16122605
          Length = 149

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +3

Query: 300 LNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLTEAARI 416
           L KKN+    QE N I S   + AEN    CL TE  R+
Sbjct: 72  LKKKNYAIKLQEFNSICSTCHMRAEN---ACLGTEIQRL 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,908,715
Number of Sequences: 37544
Number of extensions: 268551
Number of successful extensions: 553
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)