Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1965
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 163 QVRRRKS*KIEKASNVFEAFVFALMEL*TWTL 258
           Q  R ++  I++ S VF  F+FA++ +  W +
Sbjct: 392 QKARMRALNIDRVSRVFFPFLFAVLNVTYWIM 423


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/24 (37%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +3

Query: 537 VDHS--TPLCNKAIKAYKMHLLNR 602
           +DH   TP+ ++ I AY+MH +++
Sbjct: 248 IDHKMLTPIKSEPIDAYEMHQISK 271


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 284 LSRRKFKQEKFQADESRIESDCQCLW 361
           ++ ++F Q KFQA++ + +     LW
Sbjct: 275 VNTKQFTQGKFQANDIQYQGASDILW 300


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 297 NLNKKNFKQTSQELN 341
           N +KK F+QT  ELN
Sbjct: 43  NKSKKYFEQTLNELN 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,869
Number of Sequences: 438
Number of extensions: 2927
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)