Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1964
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   159   2e-40
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    76   3e-15
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    75   6e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    72   7e-14
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    56   3e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    46   6e-06
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    45   7e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    45   7e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    38   0.001
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    28   1.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   4.8  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    26   4.8  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   6.4  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    25   8.5  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   8.5  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  159 bits (387), Expect = 2e-40
 Identities = 72/80 (90%), Positives = 77/80 (96%)
 Frame = -3

Query: 523 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 344
           N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQM
Sbjct: 296 NVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQM 355

Query: 343 WISKQEYDESGPSIVHRKCF 284
           WISKQEYDESGP IV+RKCF
Sbjct: 356 WISKQEYDESGPGIVYRKCF 375



 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 23/24 (95%), Positives = 23/24 (95%)
 Frame = -2

Query: 596 AGIHETTYNSIMKCDVDIRKDLYG 525
           AGIHE TYNSIMKCDVDIRKDLYG
Sbjct: 272 AGIHEATYNSIMKCDVDIRKDLYG 295


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 76.2 bits (179), Expect = 3e-15
 Identities = 35/84 (41%), Positives = 58/84 (69%)
 Frame = -3

Query: 535 TCTANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 356
           T  +N VLSGG+T+  G  +R   E+ A++    ++KI A PER ++ W+GGSILASLST
Sbjct: 297 TLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLST 356

Query: 355 FQQMWISKQEYDESGPSIVHRKCF 284
           F+++ I+ +EY ++  +++ R+ F
Sbjct: 357 FRRLLITSEEY-KNDQNVIFRRRF 379



 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 596 AGIHETTYNSIMKCDVDIRKDLY 528
           +G+H   + SI+  D+D+R  LY
Sbjct: 277 SGLHIQLFKSILLSDIDLRSTLY 299


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 75.4 bits (177), Expect = 6e-15
 Identities = 36/85 (42%), Positives = 58/85 (68%), Gaps = 6/85 (7%)
 Frame = -3

Query: 523 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTF 353
           N ++ GGT++  G + R+Q E++ L P + ++KI A     ER Y+ W+GGSIL+SL TF
Sbjct: 349 NVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTF 407

Query: 352 QQMWISKQEYDESGP---SIVHRKC 287
            Q+WIS+QEY+E G    +++ ++C
Sbjct: 408 HQLWISRQEYEEHGSDRLALIEKRC 432



 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 599 LAGIHETTYNSIMKCDVDIRKDL 531
           + GI +   N I +CDVDIR  L
Sbjct: 324 ILGIPQLFQNCISECDVDIRASL 346


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 71.7 bits (168), Expect = 7e-14
 Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
 Frame = -3

Query: 523 NTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLSTFQ 350
           N V++GGT++ PG+++R+Q E+  LA  S + +           +VW GGSILASL  FQ
Sbjct: 346 NIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQ 405

Query: 349 QMWISKQEYDESG 311
            +W+SKQEYDE G
Sbjct: 406 HLWVSKQEYDEVG 418



 Score = 28.7 bits (61), Expect = 0.69
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 593 GIHETTYNSIMKCDVDIRKDL 531
           G+HE  Y SI+ CD ++R  L
Sbjct: 323 GLHELVYQSILACDSELRSPL 343


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 12/81 (14%)
 Frame = -3

Query: 517 VLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSIL 371
           VLSGG++MY G+  R++KEI  L         P+ +   K+KI   P R+++V+IGG++L
Sbjct: 298 VLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVL 357

Query: 370 AS-LSTFQQMWISKQEYDESG 311
           A  ++    MW+SK E++E G
Sbjct: 358 ADIMAQNDHMWVSKAEWEEYG 378



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 593 GIHETTYNSIMKCDVDIRKDLY 528
           G+ E  +++I   DVDIRK LY
Sbjct: 273 GLSEFIFDTIQAADVDIRKYLY 294


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 45.6 bits (103), Expect = 6e-06
 Identities = 24/78 (30%), Positives = 39/78 (50%)
 Frame = -3

Query: 523 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 344
           N V  GG   +PG   R+  E+ +LAP+  ++K+  P +     W   S +  L  +   
Sbjct: 322 NVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNAN 380

Query: 343 WISKQEYDESGPSIVHRK 290
            I++ EY E G +I+ RK
Sbjct: 381 KITRSEYSEHGANIMTRK 398


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 45.2 bits (102), Expect = 7e-06
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
 Frame = -3

Query: 523 NTVLSGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKYSVWI 386
           N VLSGG+T++    +R+Q+++  +    +               + +I+   ++ +VW 
Sbjct: 329 NIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWF 388

Query: 385 GGSILASLSTFQQMWISKQEYDESGPSIVHR 293
           GGS+LA    F     +K +Y+E G SI  R
Sbjct: 389 GGSLLAQTPEFGSYCHTKADYEEYGASIARR 419


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 45.2 bits (102), Expect = 7e-06
 Identities = 19/76 (25%), Positives = 38/76 (50%)
 Frame = -3

Query: 526 ANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQ 347
           +N +++GG    PG+  R+++E+T++ P    I +          W G S  +    F+ 
Sbjct: 636 SNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKA 695

Query: 346 MWISKQEYDESGPSIV 299
             ++++EY E GP  +
Sbjct: 696 AKVTREEYLEKGPEYI 711


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
 Frame = -3

Query: 526 ANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLST 356
           ++ ++ GG   +PG A  +++ I +   +   I +I PP   + ++  W G  I   +  
Sbjct: 531 SSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRI 590

Query: 355 FQQMWISKQEYDESGPSIVHRK 290
             ++WI   ++   G  ++  K
Sbjct: 591 VSELWIKNSDWKMLGSRVLQYK 612


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -3

Query: 391 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 290
           ++GGSI+A  S  + +   +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 399 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 304
           TP  +     PPS+PS+R   R  S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 466 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 356
           KEI++ A S + +  + P E+    W    ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -2

Query: 509 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 330
           RWY   PW    + KG+ +     +E  +  SSR   +  + W+D     YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533

Query: 329 GV 324
            V
Sbjct: 534 AV 535


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
 Frame = -3

Query: 529 TANTVLSGGTTMYPGIADRMQKEI--------TALAPSTMKIKIIAPPERKYSVW 389
           TA +V +GG+  +PGI   +   I          + P +M ++I+ P + + + W
Sbjct: 409 TAYSVAAGGSLCHPGIPAILISAICPHSLSFRPIILPDSMTLRIVVPLDARSNAW 463


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 332 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 418
           F   HLL   + G+D + + YG L  W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,623
Number of Sequences: 5004
Number of extensions: 46442
Number of successful extensions: 150
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)