Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1962
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    27   2.9  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   2.9  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   6.7  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   8.8  

>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 613 TSLDIRSETSVPGSGLGLFAFGSAWSKLHRG 521
           +S  IR +T VP    G  AFG  + +LH+G
Sbjct: 118 SSCYIRHDTVVPKDKNGQHAFGRLYVRLHQG 148


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 613 TSLDIRSETSVPGSGLGLFAFGSAWSKL 530
           TSL    E+++   GLG   FG+ W+ L
Sbjct: 78  TSLKTHPESAITRYGLGYAGFGNGWTAL 105


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 563 SFRLRLGVVQAASRRRAAEVPTRHQCHHAFDNIPRTHAQH 444
           + R   G+   ASR +++E P      HA  N+P+   +H
Sbjct: 208 TMRSNNGLSILASRLKSSEAPMHVHICHAIKNLPKILKKH 247


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 558 SPSARRGPSCIAATCRRGTHTASVSP 481
           S   +RGP  +  TC   THT+S  P
Sbjct: 141 SEPRKRGPR-VCRTCHTDTHTSSTCP 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,312,377
Number of Sequences: 5004
Number of extensions: 42775
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)