Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1962
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0501 + 18153252-18153453,18153973-18154224,18154809-181550... 31 0.97
10_08_0740 + 20225351-20225683,20225750-20226022,20226423-202265... 29 3.0
04_04_0891 + 29130494-29130904,29131043-29131102,29131203-291314... 29 3.0
03_01_0176 - 1416316-1416405,1416705-1416761,1416885-1417010,141... 29 3.0
08_02_0788 + 21201533-21201808,21201923-21202012,21202501-212025... 29 3.9
05_03_0485 + 14608663-14608989,14609265-14609535,14609720-146098... 29 3.9
03_05_0421 + 24065725-24066052,24066811-24067040 29 3.9
03_04_0055 + 16891212-16891848,16893166-16893206 28 6.9
12_01_0451 + 3565046-3565257,3565427-3565604 27 9.1
11_06_0424 - 23357012-23357579,23358172-23358211,23358791-233589... 27 9.1
11_01_0619 - 4961588-4962409 27 9.1
03_05_0522 - 25161595-25162285,25162394-25163139 27 9.1
>09_04_0501 +
18153252-18153453,18153973-18154224,18154809-18155015,
18155198-18157046,18157334-18157381,18158222-18158291,
18158380-18158475,18158583-18158621,18158714-18158924,
18159037-18159178,18159275-18159407,18159762-18159878
Length = 1121
Score = 30.7 bits (66), Expect = 0.97
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -2
Query: 554 LRLGVVQAASRRRAAEVPTRHQCHHAFDNIPRTHAQ--HTSMSL*QFYWRETVCMRHCFA 381
L L +++AA R RA+ R HH D+IPR H H + L ++ +RH A
Sbjct: 281 LALALLRAACRVRASPC-LRPLAHHLLDHIPRPHPHLLHAAARLAYRLRLPSLALRHYVA 339
Query: 380 FR 375
R
Sbjct: 340 LR 341
>10_08_0740 +
20225351-20225683,20225750-20226022,20226423-20226548,
20226676-20226732,20226994-20227083
Length = 292
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 577 GSGLGLFAFGSAWSKLHRGDVPPRYPHG 494
G+GLG+ FG A+ +H G V R+P G
Sbjct: 201 GAGLGITLFGMAYMFVHDGLVHRRFPVG 228
>04_04_0891 +
29130494-29130904,29131043-29131102,29131203-29131409,
29131520-29131645,29131767-29131823,29131946-29132014
Length = 309
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 577 GSGLGLFAFGSAWSKLHRGDVPPRYPHG 494
G+GLG+ FG A+ +H G V R+P G
Sbjct: 225 GAGLGITLFGMAYMFVHDGLVHRRFPVG 252
>03_01_0176 -
1416316-1416405,1416705-1416761,1416885-1417010,
1417944-1418150,1418235-1418714
Length = 319
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 577 GSGLGLFAFGSAWSKLHRGDVPPRYPHG 494
G+GLG+ FG A+ +H G V R+P G
Sbjct: 228 GAGLGITLFGMAYMFVHDGLVHRRFPVG 255
>08_02_0788 +
21201533-21201808,21201923-21202012,21202501-21202588,
21202811-21202944,21203086-21203135,21203248-21203340,
21203469-21203560,21203762-21203868,21204194-21204229
Length = 321
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 541 WSKLHRGDVPPRYPHGISVTMLSTTYRELT 452
WS L R DVP +P IS+TM++ Y +T
Sbjct: 99 WSVLRRWDVPWEWP-TISLTMVACAYSSVT 127
>05_03_0485 +
14608663-14608989,14609265-14609535,14609720-14609830,
14609870-14610423
Length = 420
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = -1
Query: 603 IFDLKHQCLDRVLVFSPSARRGPSCIAATCRRGTHTASVSPC 478
+ L QC + +L P ++ P C TC G H + C
Sbjct: 330 VVKLTEQCSNVILHRLPEKKKNPGCPTITCSIGVHQFDQALC 371
>03_05_0421 + 24065725-24066052,24066811-24067040
Length = 185
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 495 PCGYLGGTSPRCSLDHAEPK 554
PCGYLG + R S H+ PK
Sbjct: 74 PCGYLGNSICRVSAGHSTPK 93
>03_04_0055 + 16891212-16891848,16893166-16893206
Length = 225
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 540 GPSCIAATCRRGTHTASVSPCFRQHTANS 454
G A+T GT AS +P +QHTAN+
Sbjct: 116 GERAAASTTGAGTSAASTTPPQQQHTANA 144
>12_01_0451 + 3565046-3565257,3565427-3565604
Length = 129
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 470 CRKHGDTDAVWVPRRHVAAMQLGPRRAEGEK 562
CRKH + ++ RRH + G RR GE+
Sbjct: 62 CRKHPGGELLFTRRRHQPGQRGGGRRHGGER 92
>11_06_0424 -
23357012-23357579,23358172-23358211,23358791-23358969,
23359570-23359931
Length = 382
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 458 FAVCCRKHGDTDAVWVPRRHVAAMQ---LGPRRAEGEK 562
FAV +HG D + +HVAAM+ G EG++
Sbjct: 332 FAVAAARHGHPDLATMHAKHVAAMEAQLAGAGAGEGDR 369
>11_01_0619 - 4961588-4962409
Length = 273
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 291 ETSVTKSWITSTTKKQKYQTISADRKRNPKRK 386
E+SVT S +S + + S D+KR PKRK
Sbjct: 196 ESSVTGSEYSSGSSSSYSSSDSEDKKRRPKRK 227
>03_05_0522 - 25161595-25162285,25162394-25163139
Length = 478
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 422 FYWRETVCMRHCFAFRVSFSIGTYCLI 342
FYWR + + F R+S S G+Y +I
Sbjct: 234 FYWRGALYVNSYFLMRISISDGSYQVI 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,549,168
Number of Sequences: 37544
Number of extensions: 271853
Number of successful extensions: 946
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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