Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1962
         (621 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L08502-1|AAA28310.1|  766|Drosophila melanogaster developmental ...    34   0.18 
AE014134-1110|AAF52400.1|  766|Drosophila melanogaster CG9554-PA...    34   0.18 
AE014297-3683|AAN14030.1|  217|Drosophila melanogaster CG31238-P...    28   8.9  

>L08502-1|AAA28310.1|  766|Drosophila melanogaster developmental
           protein eya II protein.
          Length = 766

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 480 MVTLMPCGYLGGTSPRCSL--DHAEPKAKRPRPDPGTDVSDR 599
           MVTLMP  Y    +PRC L     EPK KRP+ D  TD  +R
Sbjct: 1   MVTLMPYNY---AAPRCGLIDKMIEPKVKRPKTD-HTDTHER 38


>AE014134-1110|AAF52400.1|  766|Drosophila melanogaster CG9554-PA,
           isoform A protein.
          Length = 766

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 480 MVTLMPCGYLGGTSPRCSL--DHAEPKAKRPRPDPGTDVSDR 599
           MVTLMP  Y    +PRC L     EPK KRP+ D  TD  +R
Sbjct: 1   MVTLMPYNY---AAPRCGLIDKMIEPKVKRPKTD-HTDTHER 38


>AE014297-3683|AAN14030.1|  217|Drosophila melanogaster CG31238-PA
           protein.
          Length = 217

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = -1

Query: 564 VFSPSARRGPSCIAATCRRGTHTASVS 484
           +F P  RRGP C  A C  GTH AS S
Sbjct: 96  LFEPFLRRGPVC-CAQC--GTHAASAS 119


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,693,143
Number of Sequences: 53049
Number of extensions: 465586
Number of successful extensions: 1473
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2559155400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)