Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1962
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83216-13|CAL63987.1|  126|Caenorhabditis elegans Hypothetical p...    25   3.7  
Z99277-6|CAB16484.1|  677|Caenorhabditis elegans Hypothetical pr...    28   4.7  

>Z83216-13|CAL63987.1|  126|Caenorhabditis elegans Hypothetical
           protein C08F11.17 protein.
          Length = 126

 Score = 25.0 bits (52), Expect(2) = 3.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 282 YIYETSVTKSWITSTTKK 335
           Y+Y   VT SW+ STT +
Sbjct: 47  YLYGCGVTASWVFSTTSE 64



 Score = 22.2 bits (45), Expect(2) = 3.7
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = +3

Query: 393 THTNCFPPIELSQ*H*RVLCVSSRYVVESMVTLMPCGYLGGTSPRCSLDHAEPKAKRPRP 572
           T + CF        +  V  VS++Y   ++ T  PCG +      CS    +   K P  
Sbjct: 61  TTSECFVSEYYKNKYNYVGAVSAKYNGSTICTKTPCGAVIKVQSNCSQAFYDRINKIPSD 120

Query: 573 D 575
           D
Sbjct: 121 D 121


>Z99277-6|CAB16484.1|  677|Caenorhabditis elegans Hypothetical
           protein Y53C12A.1 protein.
          Length = 677

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -3

Query: 619 GLTSLDIRSETSVPGSGLGLFAFGSAWSKLHRGDVPPRYPHGISVTMLS 473
           G+T L+  ++  VP +G        +W ++  G +P R+  GIS  + S
Sbjct: 289 GMTILEATTDLDVPSNG-------DSWHQIRNGQIPDRFFAGISTDLRS 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,918,819
Number of Sequences: 27780
Number of extensions: 245411
Number of successful extensions: 633
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)