Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1961
         (606 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   2.6  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   3.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.6  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   8.1  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   8.1  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 352 YFFNALLFRSQRNAPEPK 405
           Y +NAL+  + RN+PE +
Sbjct: 86  YSYNALIMMAIRNSPEKR 103


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 369 TLQIAT*CSRAEINRIVLLFFYCLYEWTSPQLTW 470
           T+ + +  S +E+     L FY    WT P+L +
Sbjct: 70  TMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAY 103


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 164 ISPAPPQVANHSAMV 208
           +SP PP +++H A+V
Sbjct: 236 LSPHPPHLSSHPAIV 250


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 164 ISPAPPQVANHSAMV 208
           +SP PP +++H A+V
Sbjct: 128 LSPHPPHLSSHPAIV 142


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 363 CPTLQIAT*CSRAEINRIVLLFFYCLYEWTSPQL 464
           C  L+    C++   + I LL ++    +TSP L
Sbjct: 173 CKPLKAGYICTKTRASLICLLAWFIAALFTSPML 206


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 164 ISPAPPQVANHSAMVLSYY 220
           +SP P  V +HS +   YY
Sbjct: 399 LSPLPSSVHSHSTIGNDYY 417


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,565
Number of Sequences: 336
Number of extensions: 3243
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)