Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1961
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    25   6.5  
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    25   6.5  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    25   6.5  
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    25   8.6  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    25   8.6  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    25   8.6  

>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 87  YFITILLFHLTEYHSSL*HES*ISNIFHQRRLKWLTIQLWCSLI 218
           +F+  L    +++H S   +  IS    + +L+W  + +WC LI
Sbjct: 48  FFLNNLFTEFSKFHDSCYPDGRIST---RSKLRWPLLIIWCILI 88


>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 87  YFITILLFHLTEYHSSL*HES*ISNIFHQRRLKWLTIQLWCSLI 218
           +F+  L    +++H S   +  IS    + +L+W  + +WC LI
Sbjct: 68  FFLNNLFTEFSKFHDSCYPDGRIST---RSKLRWPLLIIWCILI 108


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 87  YFITILLFHLTEYHSSL*HES*ISNIFHQRRLKWLTIQLWCSLI 218
           +F+  L    +++H S   +  IS    + +L+W  + +WC LI
Sbjct: 48  FFLNNLFTEFSKFHDSCYPDGRIST---RSKLRWPLLIIWCILI 88


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -1

Query: 321 ISIKRSGLNGKIVVIQLEIRLRSIAAKWATEIIK 220
           +  +R+GLN ++ +++ EI+L      +  E+IK
Sbjct: 41  LEAQRNGLNARVRLLREEIQLLQEPGSYVGEVIK 74


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 421 YFFFIAYMSGRAHSSPGVKWLPESIDIYNVNAPPT 525
           ++FF+ +  G  +++ G+ W+ +   IY+VN  P+
Sbjct: 136 FWFFLIFYYG-IYNAVGLLWITKLFHIYSVNWCPS 169


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 87  YFITILLFHLTEYHSSL*HES*ISNIFHQRRLKWLTIQLWCSLI 218
           +F+  L    +++H S   +  IS    + +L+W  + +WC LI
Sbjct: 48  FFLDNLFTEFSKFHDSCYPDGRIST---RSKLRWPLLIIWCILI 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,599
Number of Sequences: 5004
Number of extensions: 49178
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)