Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1961
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   2.3  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   2.3  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   3.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.4  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   5.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   5.4  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   5.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.1  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 223 NNFGRPFCGNRSKSNFQLNY 282
           NN+ + +C N  K  + +NY
Sbjct: 94  NNYKKLYCNNYKKLYYNINY 113


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 223 NNFGRPFCGNRSKSNFQLNY 282
           NN+ + +C N  K  + +NY
Sbjct: 94  NNYKKLYCNNYKKLYYNINY 113


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 223 NNFGRPFCGNRSKSNFQLNY 282
           NN+ + +C N  K  + +NY
Sbjct: 94  NNYKKLYCNNYRKLYYNINY 113


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 353 IFLMPYSSDRNVMLQSRNK*NSVTFFLLLI*VDEPTA 463
           +F +P  S   V L S    +   FFLLL  +  PT+
Sbjct: 270 VFYLPSDSGEKVSLCSSILLSLTVFFLLLAEIIPPTS 306


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 353 IFLMPYSSDRNVMLQSRNK*NSVTFFLLLI*VDEPTAHLV 472
           +F +P  S   V L      +   FFLLL  +  PT+ +V
Sbjct: 261 VFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVV 300


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 369 TLQIAT*CSRAEINRIVLLFFYCLYEWTSPQLTW 470
           T+ + +  S +E+     L FY    WT P+L +
Sbjct: 41  TMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAF 74


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 432 KKKVTLFYLFRLWSITLRSEE*GIKKIVFSRPDHF*CI 319
           ++ +TL + +    I L +EE G+ +I    P    CI
Sbjct: 101 ERHITLHHCYDADGIKLMNEENGVMEIKIREPVECKCI 138


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 205 GALLLLNNFGRPFCGN 252
           G+L +  NF   +CGN
Sbjct: 98  GSLTVKKNFANKYCGN 113


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 432 KKKVTLFYLFRLWSITLRSEE*GIKKIVFSRPDHF*CI 319
           ++ +TL + +    I L +EE G+ +I    P    CI
Sbjct: 101 ERHITLHHCYDADGIKLMNEENGVMEIKIREPVECKCI 138


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 353 IFLMPYSSDRNVMLQSRNK*NSVTFFLLLI*VDEPTA 463
           +F +P  S   V L      +   FFLLL  +  PT+
Sbjct: 257 VFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTS 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,647
Number of Sequences: 438
Number of extensions: 3605
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)