Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1959
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 223 2e-59
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 211 5e-56
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 116 3e-27
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 102 4e-23
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 0.70
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 26 4.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.9
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 4.9
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 6.5
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 25 8.6
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 8.6
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 223 bits (545), Expect = 2e-59
Identities = 103/174 (59%), Positives = 128/174 (73%), Gaps = 1/174 (0%)
Frame = +2
Query: 68 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 247
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 248 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 427
+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 428 RIRKLADQCTRSARIPDLPLLRWRSGSGFTSLLMEP-SLR*LRQESLNLGVRPS 586
+IR++AD C+ +GSGF +LL+E ++ ++ L V P+
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPA 174
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 211 bits (516), Expect = 5e-56
Identities = 100/160 (62%), Positives = 121/160 (75%), Gaps = 5/160 (3%)
Frame = +2
Query: 68 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 232
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 233 TGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 412
TG GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMI 119
Query: 413 DLVLDRIRKLADQCTRSARIPDLPLLRWRSGSGFTSLLME 532
D VL+RIR++AD C+ +GSG +LL+E
Sbjct: 120 DSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLE 159
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +3
Query: 459 GLQGFLIFHSFGGGPALGSLPY*WSRLSVDYGKK 560
GLQGFL+FHSFGGG G RL+++YGKK
Sbjct: 135 GLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKK 168
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 116 bits (279), Expect = 3e-27
Identities = 60/154 (38%), Positives = 84/154 (54%)
Frame = +2
Query: 68 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 247
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 248 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 427
+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLD 118
Query: 428 RIRKLADQCTRSARIPDLPLLRWRSGSGFTSLLM 529
+R+ A+ C L +GSG +LL+
Sbjct: 119 VVRREAEACDALQGFQLTHSLGGGTGSGMGTLLL 152
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 462 LQGFLIFHSFGGGPALGSLPY*WSRLSVDY 551
LQGF + HS GGG G S++ +Y
Sbjct: 130 LQGFQLTHSLGGGTGSGMGTLLLSKIREEY 159
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 102 bits (245), Expect = 4e-23
Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 2/156 (1%)
Frame = +2
Query: 71 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 250
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 251 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVL 424
+PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+ + I + ++
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119
Query: 425 DRIRKLADQCTRSARIPDLPLLRWRSGSGFTSLLME 532
D I + AD L + +GSG S L+E
Sbjct: 120 DMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLE 155
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 462 LQGFLIFHSFGGGPALGSLPY*WSRLSVDYGKKV 563
L+GF + HS GG G + RL+ Y KK+
Sbjct: 132 LEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKI 165
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.7 bits (61), Expect = 0.70
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Frame = +1
Query: 400 KGNRRFGFGQNPQAR*PVYPVCKDS*SSTP-------SVEVRLWVHFLIDGAVSPLTTAR 558
+G+ ++ F +P R + P+C+ S S+P + E R+ L+D + TA
Sbjct: 955 QGHEQYNFSLSPSIRNKLSPICRPSQGSSPKLKNNLSNTEERMGSRALLDDKTDSVITAS 1014
Query: 559 KSKLGG 576
S G
Sbjct: 1015 NSTTSG 1020
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = -3
Query: 558 SCRSQRRDGSINKEVNPEPDLHRRSGRSGILADRVHWSASLRILSK 421
S R++RR+ S ++E N PDL R +D +H++A+ R+ K
Sbjct: 190 SSRNRRRESSFSREKN--PDLTR--------SDSIHYTANTRLSEK 225
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 147 STASSLMARCPQTRPSGVETILSTLSSARPELAST 251
ST SSL + ++PS T ST SSA P S+
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS 207
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 166 WPDAHRQDHRGWRRFFQHFLQR 231
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 57 LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 179
L+S +L+ P SR++ P S + STASSL P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 121 ITDLDSGLANVYRDALTHFDLSF 53
+T +D GLA YRD TH + +
Sbjct: 146 VTMIDFGLAKKYRDFKTHVHIPY 168
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 527 SIRK*TQSRTSTEGVEDQESLQTG 456
SIR ++SR+S+ G + Q S+Q+G
Sbjct: 108 SIRSQSRSRSSSVGSDSQASIQSG 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,300
Number of Sequences: 5004
Number of extensions: 58351
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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