Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1957
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...   206   2e-54
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...   206   2e-54
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi...    29   0.49 
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.6  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   4.6  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   6.1  

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score =  206 bits (503), Expect = 2e-54
 Identities = 96/131 (73%), Positives = 112/131 (85%)
 Frame = +2

Query: 23  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 202
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 203 E*EVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 382
             E+E+I+TI+ NP Q+KIP WFLNRQKDI DGK  QL ++N+DSKLREDLERLKKI+ H
Sbjct: 61  TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120

Query: 383 RGMRHYWGLRV 415
           RG+RH   LRV
Sbjct: 121 RGLRHALDLRV 131


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score =  206 bits (503), Expect = 2e-54
 Identities = 96/131 (73%), Positives = 112/131 (85%)
 Frame = +2

Query: 23  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 202
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 203 E*EVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 382
             E+E+I+TI+ NP Q+KIP WFLNRQKDI DGK  QL ++N+DSKLREDLERLKKI+ H
Sbjct: 61  TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120

Query: 383 RGMRHYWGLRV 415
           RG+RH   LRV
Sbjct: 121 RGLRHALDLRV 131


>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 151

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 350 DLERLKKIRAHRGMRHYWGLRV 415
           D+ RL  IR +RGMRH  GL V
Sbjct: 76  DISRLVNIRCYRGMRHVNGLPV 97


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -1

Query: 252 YCLGFDMIV-IIFSTSYSVHSPARLSRSMSAFLRTMLEYLR 133
           YC  F  +  +IF T + V+SP  ++  M+ F+R +L YL+
Sbjct: 58  YCANFIALFRVIFGTIF-VYSPDGITPFMTDFVRWILIYLK 97


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 353 NLHGVLNPSWRRSAGCIYHQQYPFAYLGTSLVSY 252
           N H  ++PS R S+  +Y    P  Y  ++ VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 86  GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 178
           GK+KV+     I  + R+YSN+  +KA+  L
Sbjct: 10  GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,182,841
Number of Sequences: 5004
Number of extensions: 43385
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)