Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1957
         (579 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L22959-1|AAA28870.1|  152|Drosophila melanogaster ribosomal prot...   246   1e-65
BT024929-1|ABE01159.1|  152|Drosophila melanogaster IP16603p pro...   246   1e-65
AE013599-2985|AAM68401.1|  152|Drosophila melanogaster CG8900-PB...   246   1e-65
AE013599-2984|AAF57491.1|  152|Drosophila melanogaster CG8900-PA...   246   1e-65
AY118434-1|AAM48463.1|  152|Drosophila melanogaster RH43343p pro...   243   1e-64
BT022499-1|AAY54915.1|  246|Drosophila melanogaster IP07925p pro...    89   5e-18

>L22959-1|AAA28870.1|  152|Drosophila melanogaster ribosomal protein
           S18 protein.
          Length = 152

 Score =  246 bits (603), Expect = 1e-65
 Identities = 113/131 (86%), Positives = 125/131 (95%)
 Frame = +2

Query: 23  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 202
           MSLVIP+KFQHILRIMNTNIDGKRKV  AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1   MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60

Query: 203 E*EVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 382
           E EV+K++TI+SNP QYK+P+WFLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61  EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120

Query: 383 RGMRHYWGLRV 415
           RG+RHYWGLRV
Sbjct: 121 RGLRHYWGLRV 131


>BT024929-1|ABE01159.1|  152|Drosophila melanogaster IP16603p
           protein.
          Length = 152

 Score =  246 bits (603), Expect = 1e-65
 Identities = 113/131 (86%), Positives = 125/131 (95%)
 Frame = +2

Query: 23  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 202
           MSLVIP+KFQHILRIMNTNIDGKRKV  AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1   MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60

Query: 203 E*EVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 382
           E EV+K++TI+SNP QYK+P+WFLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61  EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120

Query: 383 RGMRHYWGLRV 415
           RG+RHYWGLRV
Sbjct: 121 RGLRHYWGLRV 131


>AE013599-2985|AAM68401.1|  152|Drosophila melanogaster CG8900-PB,
           isoform B protein.
          Length = 152

 Score =  246 bits (603), Expect = 1e-65
 Identities = 113/131 (86%), Positives = 125/131 (95%)
 Frame = +2

Query: 23  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 202
           MSLVIP+KFQHILRIMNTNIDGKRKV  AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1   MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60

Query: 203 E*EVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 382
           E EV+K++TI+SNP QYK+P+WFLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61  EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120

Query: 383 RGMRHYWGLRV 415
           RG+RHYWGLRV
Sbjct: 121 RGLRHYWGLRV 131


>AE013599-2984|AAF57491.1|  152|Drosophila melanogaster CG8900-PA,
           isoform A protein.
          Length = 152

 Score =  246 bits (603), Expect = 1e-65
 Identities = 113/131 (86%), Positives = 125/131 (95%)
 Frame = +2

Query: 23  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 202
           MSLVIP+KFQHILRIMNTNIDGKRKV  AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1   MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60

Query: 203 E*EVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 382
           E EV+K++TI+SNP QYK+P+WFLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61  EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120

Query: 383 RGMRHYWGLRV 415
           RG+RHYWGLRV
Sbjct: 121 RGLRHYWGLRV 131


>AY118434-1|AAM48463.1|  152|Drosophila melanogaster RH43343p
           protein.
          Length = 152

 Score =  243 bits (595), Expect = 1e-64
 Identities = 112/131 (85%), Positives = 124/131 (94%)
 Frame = +2

Query: 23  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 202
           MSLVIP+KFQ ILRIMNTNIDGKRKV  AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1   MSLVIPEKFQRILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60

Query: 203 E*EVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 382
           E EV+K++TI+SNP QYK+P+WFLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61  EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120

Query: 383 RGMRHYWGLRV 415
           RG+RHYWGLRV
Sbjct: 121 RGLRHYWGLRV 131


>BT022499-1|AAY54915.1|  246|Drosophila melanogaster IP07925p
           protein.
          Length = 246

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 39/48 (81%), Positives = 45/48 (93%)
 Frame = +2

Query: 119 IKGVGRRYSNIVLKKADIDLDKRAGECTE*EVEKIITIMSNPRQYKIP 262
           IKGVGRRYSNIVLKKAD+DL KRAGECTE EV+K++TI+SNP QYK+P
Sbjct: 1   IKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVP 48


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,196,489
Number of Sequences: 53049
Number of extensions: 489103
Number of successful extensions: 1342
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2296745289
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)