Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1956
         (594 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6LVQ8 Cluster: Hypothetical ComF-related protein; n=4;...    36   0.54 
UniRef50_Q754I1 Cluster: AFR095Cp; n=1; Eremothecium gossypii|Re...    33   3.8  
UniRef50_UPI0000D90C0C Cluster: PREDICTED: similar to SPT2, Supp...    33   5.0  
UniRef50_A3MFF5 Cluster: Putative uncharacterized protein; n=2; ...    33   5.0  

>UniRef50_Q6LVQ8 Cluster: Hypothetical ComF-related protein; n=4;
           Vibrionaceae|Rep: Hypothetical ComF-related protein -
           Photobacterium profundum (Photobacterium sp. (strain
           SS9))
          Length = 237

 Score = 36.3 bits (80), Expect = 0.54
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 178 SV*CGAHLSHHPPPRDAGPAVVGATTTSPL--CRQAIRSPPRWRRLESYRL 324
           S+ C   ++H P P     A  G TT +P+  C Q +RSPP W RL  YRL
Sbjct: 36  SIWCRHCIAHFPQPPYC--ARCGTTTVNPVEQCGQCLRSPPPWHRL--YRL 82


>UniRef50_Q754I1 Cluster: AFR095Cp; n=1; Eremothecium gossypii|Rep:
           AFR095Cp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 670

 Score = 33.5 bits (73), Expect = 3.8
 Identities = 17/35 (48%), Positives = 18/35 (51%)
 Frame = -3

Query: 223 PEGEGDGRDVLRTKRFAFPPLPFHGFCLMRGSDAG 119
           PEGEG     LR  R  F P PF GF +  G  AG
Sbjct: 89  PEGEGGREQALRALRRRFQPGPFGGFYVFIGRVAG 123


>UniRef50_UPI0000D90C0C Cluster: PREDICTED: similar to SPT2,
           Suppressor of Ty, domain containing 1; n=2;
           Mammalia|Rep: PREDICTED: similar to SPT2, Suppressor of
           Ty, domain containing 1 - Monodelphis domestica
          Length = 597

 Score = 33.1 bits (72), Expect = 5.0
 Identities = 24/91 (26%), Positives = 31/91 (34%)
 Frame = -1

Query: 285 PDSLPTERAGGRGADDRWSGVPRGRVMGEMCSALNASLSPLCLFMGSVSCXXXXXXXXXX 106
           P   P   A GRG     SG P G   G   S    S+ P C  +               
Sbjct: 410 PGGQPVSGASGRGRSTSGSGRPAGGGSGRTVSGSGTSVRPRCTVVSETIFSKNIINRPSN 469

Query: 105 XXXVSSIPTCPALHPQGRVEVRRFPPEKKKK 13
                     PA++PQG  +   FPP  +K+
Sbjct: 470 GMRPPPPGYRPAVYPQG-TQRPPFPPLARKR 499


>UniRef50_A3MFF5 Cluster: Putative uncharacterized protein; n=2;
           Burkholderia mallei|Rep: Putative uncharacterized
           protein - Burkholderia mallei (strain NCTC 10247)
          Length = 106

 Score = 33.1 bits (72), Expect = 5.0
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +1

Query: 217 PRDAGPAVVGATTTSPLCRQAIRSPPRWRRLES 315
           P  AGP+ VG  T + L    IRSPPR  R ES
Sbjct: 68  PGRAGPSRVGVATAAGLAAATIRSPPRHPRGES 100


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 644,755,997
Number of Sequences: 1657284
Number of extensions: 14059863
Number of successful extensions: 42600
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42565
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41488046300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)