Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1956
         (594 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   1.5  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   4.5  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   5.9  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   7.8  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 199 DVLRTKRFAFPPLPFHGFCLMR 134
           D+ +  + AFPPL  HG  L R
Sbjct: 285 DLYKKIKKAFPPLSLHGQLLWR 306


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 311 SNRRHLGGLRIACRQRGLVV 252
           S+RRH   L+  CR+R + V
Sbjct: 259 SSRRHRKNLKDPCRRRQMYV 278


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/33 (27%), Positives = 13/33 (39%)
 Frame = +1

Query: 211 PPPRDAGPAVVGATTTSPLCRQAIRSPPRWRRL 309
           PP  DAG  +  +      C        RWR++
Sbjct: 354 PPQDDAGNLISPSINDDGTCGNGYGCEHRWRQI 386


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/33 (27%), Positives = 13/33 (39%)
 Frame = +1

Query: 211 PPPRDAGPAVVGATTTSPLCRQAIRSPPRWRRL 309
           PP  DAG  +  +      C        RWR++
Sbjct: 353 PPQDDAGNLISPSINDDGTCGNGYVCEHRWRQI 385


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,499
Number of Sequences: 336
Number of extensions: 3147
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)