Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1956
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    27   2.7  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   4.8  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.3  

>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 137 HETEPMKRQRGESEAFSAEHISPITLPLGTPDQRSSAPRPPA 262
           H  +P KR+   S      ++ P++ P  +PD+  S+P PP+
Sbjct: 244 HAKKP-KRKHTRSTV-PTSNVEPVSQPQPSPDKIVSSPNPPS 283


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 137 HETEPMKRQRGESEAFSAEHISPIT 211
           + T P+K  +G S+ F+ EH++ +T
Sbjct: 205 NNTSPLKLFQGASDPFTREHLNQLT 229


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 232 PAVVGATTTSPLCRQAIRSPPRWRRL 309
           PA   A+T SP+ +    +PP+ RRL
Sbjct: 208 PAATAASTASPVKKPPPPAPPKPRRL 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,539
Number of Sequences: 5004
Number of extensions: 51456
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)