Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1956
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1637 - 34957626-34957883,34958271-34958420,34958522-349586... 30 1.6
11_04_0397 - 17230152-17231453 29 2.1
02_03_0229 + 16617371-16617970 29 2.1
09_06_0115 + 20944586-20945185 29 2.8
03_05_0462 - 24564170-24565447 29 2.8
03_05_1046 - 29923870-29924128,29924727-29924785 29 3.7
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240... 29 3.7
10_08_0544 - 18655186-18655567,18656835-18657151 28 4.9
08_02_1034 + 23823194-23823307,23823399-23823620,23823984-238243... 28 4.9
06_01_0288 - 2106113-2109055 28 6.5
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428... 27 8.5
10_01_0326 + 3574129-3574329,3575144-3575692,3575914-3576072,357... 27 8.5
08_01_0876 - 8598664-8599374 27 8.5
03_02_0816 + 11487811-11488708,11488835-11489235 27 8.5
03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447 27 8.5
>04_04_1637 -
34957626-34957883,34958271-34958420,34958522-34958686,
34958819-34958889,34959265-34959691
Length = 356
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +2
Query: 146 EPMKRQRGESEAFSAEHISPITLPLGTPDQRSSAPRPPALSVGRLSGARLDGAG 307
EP+KR+RG + + ++ Q+ PP + G +SGA + G G
Sbjct: 60 EPVKRKRGRPRKYGPDGTMKVSTAAAAQHQQQMLSAPPRM--GSVSGADMVGGG 111
>11_04_0397 - 17230152-17231453
Length = 433
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 187 CGAHLSHHPPPRDAGPAVVGATTTSPLCRQAIRSPPRW 300
C H +H P PR G A GAT L A+ W
Sbjct: 51 CSLHWAHRPLPRGVGTAAFGATAVLCLAVGAVSLLLSW 88
>02_03_0229 + 16617371-16617970
Length = 199
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = -3
Query: 307 TGAI*AGSG*PADREGWWSW---RRRPLVRRPEGEGDG 203
T + G G PA R WW+W RR +V G+G G
Sbjct: 94 TPVLPGGGGAPARRSRWWAWPWRRRGAVVIGGAGDGGG 131
>09_06_0115 + 20944586-20945185
Length = 199
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = -3
Query: 289 GSG*PADREGWWSW---RRRPLVRRPEGEGDG 203
G G PA R WW+W RR +V G+G G
Sbjct: 100 GGGAPARRSRWWAWPWRRRGAVVIGGAGDGGG 131
>03_05_0462 - 24564170-24565447
Length = 425
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 256 WSWRRRPLVRRPEGEGDGRD 197
WS R LVRRP+ +GDG D
Sbjct: 301 WSVLDRELVRRPDDDGDGDD 320
>03_05_1046 - 29923870-29924128,29924727-29924785
Length = 105
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Frame = -3
Query: 310 LTGAI*AGSG*PADREGWWSWRRR--------PLVRRPEGEGDGRD 197
+ G I GSG EG W WRRR RR G GDG +
Sbjct: 56 VAGEIEGGSGDGDGEEGEWRWRRRGRRAMTATATERRARGGGDGEE 101
>01_06_0946 +
33220910-33222221,33223373-33223734,33223863-33224073,
33224174-33224411,33224492-33224642,33224733-33224997,
33231775-33231820,33232167-33232815,33232883-33233384,
33235023-33235360,33235466-33235676,33235769-33235992,
33236042-33236115,33236147-33236234,33236316-33236612
Length = 1655
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Frame = -3
Query: 262 GWWSWRRRPLVRRPE----GEGDGRDVL 191
GWW WR R RR E G G DVL
Sbjct: 467 GWWFWRNRVRTRRNETAAAAAGGGDDVL 494
>10_08_0544 - 18655186-18655567,18656835-18657151
Length = 232
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3
Query: 39 AGLPPSPGDEGRGMSESN*LKPPVAQQPASEPRMRQ 146
AG PP P R E+ L PPV SE +RQ
Sbjct: 46 AGPPPPPPPRPRDEPEAEPLPPPVQLGEVSEEELRQ 81
>08_02_1034 + 23823194-23823307,23823399-23823620,23823984-23824309,
23824648-23824777,23825145-23825441,23825550-23825815,
23827835-23828333,23828902-23828993,23829571-23829735,
23829817-23830204,23830275-23830393,23830494-23830524,
23830675-23830880,23830970-23831014,23831120-23831201,
23832210-23832398,23834499-23834602,23834669-23834759,
23835097-23835225,23835425-23835556,23835779-23835949,
23836143-23836171,23836214-23836301,23836313-23836391,
23836666-23836844
Length = 1390
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 21 FFQVEIAGLPPSPG-DEGRGMSESN*LKPPVAQQPASEPRMRQNP 152
F + + + P SP +EGRG + SN + Q+PA+ ++ P
Sbjct: 1055 FLEADASSRPLSPAVEEGRGKTASNANESSTPQKPANRVENKRRP 1099
>06_01_0288 - 2106113-2109055
Length = 980
Score = 27.9 bits (59), Expect = 6.5
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Frame = +3
Query: 306 VRKLSLTMYLSIITAKSGS--GNKHLNKLNSYTFNII*KNKSKNFR*HNWQPTLFPTRLQ 479
+ KLS +YL + G HL L+ F + NK K NW PT T L
Sbjct: 374 IGKLSQLIYLDLSYNAFGGRLSEVHLGNLSRLDFLSLASNKLKIVIEPNWMPTFQLTGLG 433
Query: 480 INGVAEFP*HL*CFGRTFTASALI 551
++G P H+ + R+ T +I
Sbjct: 434 LHGCHVGP-HIPAWLRSQTKIKMI 456
>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
22343193-22343317,22343815-22344276,22344357-22344700,
22345061-22345406,22345492-22345941,22346760-22347051,
22347171-22347515,22347611-22347834,22348072-22348563,
22348664-22349056,22349601-22349741,22349845-22350207,
22350494-22352683,22353298-22353360,22353434-22353535,
22353672-22354027,22354326-22354413,22354517-22354750,
22355508-22355975
Length = 2632
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = +1
Query: 154 EKAKGGKRSV*CGAHLSHHPPPRDAGPAVVGATTTSPLCRQAIRSPPRWRRLESYRLQCI 333
EK K R + H +P R+ AV A Q ++ P WR L R QCI
Sbjct: 1594 EKLKRQYRKLAIKYHPDKNPEGREKFVAVQKAYERLQASMQGLQGPQVWRLLLLLRAQCI 1653
>10_01_0326 +
3574129-3574329,3575144-3575692,3575914-3576072,
3576349-3577543,3577626-3577762,3578052-3578242,
3578888-3579218
Length = 920
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 214 PPRDAGPAVVGATTTSPLCRQAIRS 288
PP+D G A V T TSP ++RS
Sbjct: 672 PPQDVGAAGVHHTDTSPATHSSVRS 696
>08_01_0876 - 8598664-8599374
Length = 236
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 205 HHPPPRDAGPAVVGATTTSPLCRQAIRSPPRWRRLESYR 321
H PPPR + PL R+A SPPR R ++ R
Sbjct: 6 HSPPPRHRTSSSPPHRCVEPLHRRAPLSPPRRCRCKNNR 44
>03_02_0816 + 11487811-11488708,11488835-11489235
Length = 432
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 288 APDSLPTERAGGRGADDRW 232
A D+ PT A G+G+D+RW
Sbjct: 202 ASDAPPTPEATGKGSDNRW 220
>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
Length = 420
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 196 HLSHHPPPRDAGPAVVGATTTSPL 267
H HHPPP ++ A+TT+PL
Sbjct: 235 HHHHHPPPPPPELQLLPASTTAPL 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,737,051
Number of Sequences: 37544
Number of extensions: 452191
Number of successful extensions: 1688
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1685
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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